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11 files changed

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‎examples/02_eddy_identification/pet_eddy_detection.py‎

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@@ -12,6 +12,7 @@
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from py_eddy_tracker.dataset.grid import RegularGridDataset
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from py_eddy_tracker import data
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# %%
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def start_axes(title):
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fig = plt.figure(figsize=(13, 5))

‎examples/08_tracking_manipulation/pet_track_anim.py‎

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"""
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from matplotlib import pyplot as plt
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from matplotlib.collections import LineCollection
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import matplotlib.transforms as mt
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from numpy import arange
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from py_eddy_tracker.observations.tracking import TrackEddiesObservations
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from py_eddy_tracker.poly import create_vertice

‎examples/10_tracking_diagnostics/pet_propagation.py‎

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from numpy import arange, empty
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from numba import njit
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# %%
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# We will create a function compile with numba, to compute a field which contains curvilign distance
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@njit(cache=True)

‎src/py_eddy_tracker/__init__.py‎

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You should have received a copy of the GNU General Public License
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along with py-eddy-tracker. If not, see <http://www.gnu.org/licenses/>.
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Copyright (c) 2014-2017 by Antoine Delepoulle and Evan Mason
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Email: [email protected]
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Copyright (c) 2014-2020 by Evan Mason
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Email: [email protected]
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===========================================================================
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__init__.py
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Version 3.0.0
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===========================================================================
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"""
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from argparse import ArgumentParser
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import logging
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import numpy
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nc_attr=dict(
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longname="speed radius scale",
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units="m",
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description="Radius of a circle whose area is equal to that enclosed by the contour of maximum circum-average speed",
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description="Radius of a circle whose area is equal to that \
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enclosed by the contour of maximum circum-average speed",
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),
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),
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track=dict(

‎src/py_eddy_tracker/appli.py‎

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# -*- coding: utf-8 -*-
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"""
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===========================================================================
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This file is part of py-eddy-tracker.
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py-eddy-tracker is free software: you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 3 of the License, or
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(at your option) any later version.
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py-eddy-tracker is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License
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along with py-eddy-tracker. If not, see <http://www.gnu.org/licenses/>.
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Copyright (c) 2014-2020 by Evan Mason
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Email: [email protected]
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===========================================================================
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"""
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from py_eddy_tracker import EddyParser
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from py_eddy_tracker.observations.tracking import TrackEddiesObservations
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from netCDF4 import Dataset

‎src/py_eddy_tracker/dataset/grid.py‎

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@@ -424,8 +424,8 @@ def setup_coordinates(self):
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x_name, y_name = self.coordinates
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if self.is_centered:
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logger.info("Grid center")
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self.x_c = self.vars[x_name].astype('float64')
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self.y_c = self.vars[y_name].astype('float64')
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self.x_c = self.vars[x_name].astype("float64")
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self.y_c = self.vars[y_name].astype("float64")
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self.x_bounds = concatenate((self.x_c, (2 * self.x_c[-1] - self.x_c[-2],)))
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self.y_bounds = concatenate((self.y_c, (2 * self.y_c[-1] - self.y_c[-2],)))
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self.y_bounds[-1] -= d_y[-1] / 2
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else:
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self.x_bounds = self.vars[x_name].astype('float64')
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self.y_bounds = self.vars[y_name].astype('float64')
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self.x_bounds = self.vars[x_name].astype("float64")
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self.y_bounds = self.vars[y_name].astype("float64")
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if len(self.x_dim) == 1:
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self.x_c = self.x_bounds.copy()

‎src/py_eddy_tracker/eddy_feature.py‎

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along with py-eddy-tracker. If not, see <http://www.gnu.org/licenses/>.
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Copyright (c) 2014-2020 by Evan Mason
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Email: evanmason@gamil.com
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Email: evanmason@gmail.com
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===========================================================================
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Version 3.0
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===========================================================================
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"""
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import logging

‎src/py_eddy_tracker/generic.py‎

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# -*- coding: utf-8 -*-
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"""
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===========================================================================
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This file is part of py-eddy-tracker.
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py-eddy-tracker is free software: you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 3 of the License, or
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(at your option) any later version.
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11+
py-eddy-tracker is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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16+
You should have received a copy of the GNU General Public License
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along with py-eddy-tracker. If not, see <http://www.gnu.org/licenses/>.
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Copyright (c) 2014-2020 by Evan Mason
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Email: [email protected]
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===========================================================================
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"""
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from numpy import (
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sin,
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pi,
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for i in range(nb):
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out[i] = (x[i] - ref) % 360 + ref
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return out, y
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‎src/py_eddy_tracker/gui.py‎

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# -*- coding: utf-8 -*-
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"""
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===========================================================================
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This file is part of py-eddy-tracker.
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py-eddy-tracker is free software: you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
8+
the Free Software Foundation, either version 3 of the License, or
9+
(at your option) any later version.
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py-eddy-tracker is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
15+
16+
You should have received a copy of the GNU General Public License
17+
along with py-eddy-tracker. If not, see <http://www.gnu.org/licenses/>.
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19+
Copyright (c) 2014-2020 by Evan Mason
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Email: [email protected]
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===========================================================================
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"""
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import numpy as np
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from datetime import datetime
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import matplotlib.pyplot as plt

‎src/py_eddy_tracker/poly.py‎

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# -*- coding: utf-8 -*-
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"""
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===========================================================================
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This file is part of py-eddy-tracker.
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py-eddy-tracker is free software: you can redistribute it and/or modify
7+
it under the terms of the GNU General Public License as published by
8+
the Free Software Foundation, either version 3 of the License, or
9+
(at your option) any later version.
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11+
py-eddy-tracker is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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16+
You should have received a copy of the GNU General Public License
17+
along with py-eddy-tracker. If not, see <http://www.gnu.org/licenses/>.
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19+
Copyright (c) 2014-2020 by Evan Mason
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Email: [email protected]
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===========================================================================
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"""
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from numpy import empty, where, array
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from numba import njit, prange, types as numba_types
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from Polygon import Polygon

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