diff --git a/.all-contributorsrc b/.all-contributorsrc index 08729c21..59896722 100644 --- a/.all-contributorsrc +++ b/.all-contributorsrc @@ -43,6 +43,145 @@ "code", "test" ] + }, + { + "login": "oliver-xapix-io", + "name": "Oliver Thamm", + "avatar_url": "https://avatars0.githubusercontent.com/u/13470858?v=4", + "profile": "https://github.com/oliver-xapix-io", + "contributions": [ + "doc" + ] + }, + { + "login": "MM-coder", + "name": "Mauro M.", + "avatar_url": "https://avatars1.githubusercontent.com/u/22800592?v=4", + "profile": "https://maurom.dev", + "contributions": [ + "doc" + ] + }, + { + "login": "JKSenthil", + "name": "JKSenthil", + "avatar_url": "https://avatars2.githubusercontent.com/u/12533226?v=4", + "profile": "https://github.com/JKSenthil", + "contributions": [ + "code", + "doc", + "test" + ] + }, + { + "login": "SeanCena", + "name": "SeanCena", + "avatar_url": "https://avatars1.githubusercontent.com/u/17202203?v=4", + "profile": "https://github.com/SeanCena", + "contributions": [ + "code", + "doc", + "test" + ] + }, + { + "login": "Abdirahiim", + "name": "Abdirahiim Yassin ", + "avatar_url": "https://avatars0.githubusercontent.com/u/13730460?v=4", + "profile": "https://github.com/Abdirahiim", + "contributions": [ + "doc", + "tool", + "platform" + ] + }, + { + "login": "kant", + "name": "Darío Hereñú", + "avatar_url": "https://avatars1.githubusercontent.com/u/32717?v=4", + "profile": "https://github.com/kant", + "contributions": [ + "doc" + ] + }, + { + "login": "o-ba", + "name": "Oliver", + "avatar_url": "https://avatars1.githubusercontent.com/u/8812114?v=4", + "profile": "https://github.com/o-ba", + "contributions": [ + "doc" + ] + }, + { + "login": "carmelag", + "name": "carmelag", + "avatar_url": "https://avatars0.githubusercontent.com/u/5394906?v=4", + "profile": "http://www.carmelagreco.dev", + "contributions": [ + "doc" + ] + }, + { + "login": "Kilo59", + "name": "Gabriel", + "avatar_url": "https://avatars3.githubusercontent.com/u/13108583?v=4", + "profile": "https://github.com/Kilo59", + "contributions": [ + "code", + "infra", + "test", + "doc" + ] + }, + { + "login": "egbakou", + "name": "Kodjo Laurent Egbakou", + "avatar_url": "https://avatars0.githubusercontent.com/u/26142591?v=4", + "profile": "https://lioncoding.com", + "contributions": [ + "doc", + "tool", + "platform" + ] + }, + { + "login": "Turreted", + "name": "Turreted", + "avatar_url": "https://avatars2.githubusercontent.com/u/41593269?v=4", + "profile": "https://github.com/Turreted", + "contributions": [ + "code" + ] + }, + { + "login": "ibhuiyan17", + "name": "Ibtida Bhuiyan", + "avatar_url": "https://avatars1.githubusercontent.com/u/33792969?v=4", + "profile": "http://ibtida.me", + "contributions": [ + "code", + "doc" + ] + }, + { + "login": "james-gray", + "name": "James Gray", + "avatar_url": "https://avatars1.githubusercontent.com/u/2904597?v=4", + "profile": "https://github.com/james-gray", + "contributions": [ + "code" + ] + }, + { + "login": "nischalshankar", + "name": "Nischal Shankar", + "avatar_url": "https://avatars2.githubusercontent.com/u/33793411?v=4", + "profile": "https://github.com/nischalshankar", + "contributions": [ + "code", + "doc" + ] } ], "contributorsPerLine": 7, diff --git a/.deepsource.toml b/.deepsource.toml new file mode 100644 index 00000000..f772ce8c --- /dev/null +++ b/.deepsource.toml @@ -0,0 +1,10 @@ +version = 1 + +test_patterns = ["tests/**"] + +[[analyzers]] +name = "python" +enabled = true + + [analyzers.meta] + runtime_version = "3.x.x" diff --git a/.dockerignore b/.dockerignore new file mode 100644 index 00000000..02346aa4 --- /dev/null +++ b/.dockerignore @@ -0,0 +1,5 @@ +.gitignore +README.md +.github +.travis.yml +.env.example \ No newline at end of file diff --git a/.env.example b/.env.example index cb380afb..e35ce549 100644 --- a/.env.example +++ b/.env.example @@ -1,2 +1,3 @@ # Port to serve app on. -PORT = 5000 \ No newline at end of file +PORT = 5000 +LOCAL_REDIS_URL = redis://localhost:6379 diff --git a/.github/FUNDING.yml b/.github/FUNDING.yml new file mode 100644 index 00000000..2d0d7eb9 --- /dev/null +++ b/.github/FUNDING.yml @@ -0,0 +1,12 @@ +# These are supported funding model platforms + +#github: # Replace with up to 4 GitHub Sponsors-enabled usernames e.g., [user1, user2] +#patreon: # Replace with a single Patreon username +#open_collective: # Replace with a single Open Collective username +ko_fi: ExpDev +#tidelift: # Replace with a single Tidelift platform-name/package-name e.g., npm/babel +#community_bridge: # Replace with a single Community Bridge project-name e.g., cloud-foundry +#liberapay: # Replace with a single Liberapay username +#issuehunt: # Replace with a single IssueHunt username +#otechie: # Replace with a single Otechie username +#custom: # Replace with up to 4 custom sponsorship URLs e.g., ['link1', 'link2'] diff --git a/.github/ISSUE_TEMPLATE/bug_report.md b/.github/ISSUE_TEMPLATE/bug_report.md new file mode 100644 index 00000000..0625e1fb --- /dev/null +++ b/.github/ISSUE_TEMPLATE/bug_report.md @@ -0,0 +1,62 @@ +--- +name: Bug report +about: Create a report to help us improve +title: "[BUG]" +labels: bug +assignees: '' + +--- + +**Describe the bug** +A clear and concise description of what the bug is. Please include timestamps and HTTP status codes. +If possible include the [httpie](https://httpie.org/) or `curl` request and response. +Please include the verbose flag. `-v` + +**To Reproduce** +`httpie/curl` request to reproduce the behavior: +1. Getting Italy data at `v2/locations/IT` gives a 422. +2. Expected to same data as `/v2/locations?country_code=IT` +2. See httpie request & response below + +**Expected behavior** +A clear and concise description of what you expected to happen. + +**Screenshots or Requests** +If applicable, add screenshots or `httpie/curl`requests to help explain your problem. +```sh +$ http GET https://coronavirus-tracker-api.herokuapp.com/v2/locations/IT -v +GET /v2/locations/IT HTTP/1.1 +Accept: */* +Accept-Encoding: gzip, deflate +Connection: keep-alive +Host: coronavirus-tracker-api.herokuapp.com +User-Agent: HTTPie/2.0.0 + + + +HTTP/1.1 422 Unprocessable Entity +Connection: keep-alive +Content-Length: 99 +Content-Type: application/json +Date: Sat, 18 Apr 2020 12:50:29 GMT +Server: uvicorn +Via: 1.1 vegur + +{ + "detail": [ + { + "loc": [ + "path", + "id" + ], + "msg": "value is not a valid integer", + "type": "type_error.integer" + } + ] +} +``` + + +**Additional context** +Add any other context about the problem here. +Does the other instance at https://covid-tracker-us.herokuapp.com/ produce the same result? diff --git a/.gitignore b/.gitignore index e181bbf6..ab6f17ff 100644 --- a/.gitignore +++ b/.gitignore @@ -51,6 +51,7 @@ htmlcov/ nosetests.xml coverage.xml *,cover +locustfile.py # Translations *.mo @@ -63,4 +64,10 @@ coverage.xml docs/_build/ # PyBuilder -target/ \ No newline at end of file +target/ + +# OSX Stuff +.DS_Store + +# IntelliJ/Pycharm +.idea/ diff --git a/.travis.yml b/.travis.yml index a54844dd..3ea52aa9 100644 --- a/.travis.yml +++ b/.travis.yml @@ -7,4 +7,8 @@ install: - "pip install pipenv" - "pipenv install --dev --skip-lock" script: - - "make test lint" + - "make test" + - "make lint" + - "make check-fmt" +after_success: + - coveralls diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md new file mode 100644 index 00000000..4ecdd0b6 --- /dev/null +++ b/CONTRIBUTING.md @@ -0,0 +1,36 @@ +# Contribution to Coronavirus Tracker API + +First off, thanks for taking the time to contribute! +Every commit supports the open source ecosystem in case of [COVID-19](https://en.wikipedia.org/wiki/2019%E2%80%9320_coronavirus_pandemic). + +## Testing + +We have a handful of unit tests to cover most of functions. +Please write new test cases for new code you create. + +## Submitting changes + +* If you're unable to find an open issue, [open a new one](https://github.com/ExpDev07/coronavirus-tracker-api/issues/new). Be sure to include a **title and clear description**, as much relevant information as possible +* Open a new [GitHub Pull Request to coronavirus-tracker-api](https://github.com/ExpDev07/coronavirus-tracker-api/pulls) with a clear list of what you've done (read more about [pull requests](http://help.github.com/pull-requests/)). Include the relevant issue number if applicable. +* We will love you forever if you include unit tests. We can always use more test coverage +* If you have updated [Pipefile](./Pipfile), you have to update `Pipfile.lock`, `requirements.txt` and `requirements-dev.txt`. See section [Update requirements files](./README.md#update-requirements-files). + +## Your First Code Contribution + +Unsure where to begin contributing to coronavirus-tracker-api ? You can start by looking through these issues labels: + +* [Enhancement issues](https://github.com/ExpDev07/coronavirus-tracker-api/labels/enhancement) - issues for new feature or request +* [Help wanted issues](https://github.com/ExpDev07/coronavirus-tracker-api/labels/help%20wanted) - extra attention is needed +* [Documentation issues](https://github.com/ExpDev07/coronavirus-tracker-api/labels/documentation) - improvements or additions to documentation + +## Styleguide + +Please follow [PEP8](https://www.python.org/dev/peps/pep-0008/) guide. +See [Running Test](./README.md#running-tests), [Linting](./README.md#linting) and [Formatting](./README.md#formatting) sections for further instructions to validate your change. + + +We encourage you to pitch in and join the [Coronavirus Tracker API Team](https://github.com/ExpDev07/coronavirus-tracker-api#contributors-)! + +Thanks! :heart: :heart: :heart: + +[Coronavirus Tracker API Team](https://github.com/ExpDev07/coronavirus-tracker-api#contributors-) diff --git a/Dockerfile b/Dockerfile new file mode 100644 index 00000000..25e21bc5 --- /dev/null +++ b/Dockerfile @@ -0,0 +1,14 @@ +FROM tiangolo/uvicorn-gunicorn-fastapi:python3.7 + +ENV VARIABLE_NAME APP + +# COPY DEPENDENCIES +COPY requirements.txt ./ + +# COPY PROJECT +COPY ./app /app/app + +# INSTALL DEPENDENCIES +RUN pip install --no-cache-dir -r requirements.txt + +EXPOSE 80 diff --git a/LICENSE.md b/LICENSE.md new file mode 100644 index 00000000..f288702d --- /dev/null +++ b/LICENSE.md @@ -0,0 +1,674 @@ + GNU GENERAL PUBLIC LICENSE + Version 3, 29 June 2007 + + Copyright (C) 2007 Free Software Foundation, Inc. + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + + Preamble + + The GNU General Public License is a free, copyleft license for +software and other kinds of works. + + The licenses for most software and other practical works are designed +to take away your freedom to share and change the works. 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Interpretation of Sections 15 and 16. + + If the disclaimer of warranty and limitation of liability provided +above cannot be given local legal effect according to their terms, +reviewing courts shall apply local law that most closely approximates +an absolute waiver of all civil liability in connection with the +Program, unless a warranty or assumption of liability accompanies a +copy of the Program in return for a fee. + + END OF TERMS AND CONDITIONS + + How to Apply These Terms to Your New Programs + + If you develop a new program, and you want it to be of the greatest +possible use to the public, the best way to achieve this is to make it +free software which everyone can redistribute and change under these terms. + + To do so, attach the following notices to the program. It is safest +to attach them to the start of each source file to most effectively +state the exclusion of warranty; and each file should have at least +the "copyright" line and a pointer to where the full notice is found. + + + Copyright (C) + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + +Also add information on how to contact you by electronic and paper mail. + + If the program does terminal interaction, make it output a short +notice like this when it starts in an interactive mode: + + Copyright (C) + This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. + This is free software, and you are welcome to redistribute it + under certain conditions; type `show c' for details. + +The hypothetical commands `show w' and `show c' should show the appropriate +parts of the General Public License. Of course, your program's commands +might be different; for a GUI interface, you would use an "about box". + + You should also get your employer (if you work as a programmer) or school, +if any, to sign a "copyright disclaimer" for the program, if necessary. +For more information on this, and how to apply and follow the GNU GPL, see +. + + The GNU General Public License does not permit incorporating your program +into proprietary programs. If your program is a subroutine library, you +may consider it more useful to permit linking proprietary applications with +the library. If this is what you want to do, use the GNU Lesser General +Public License instead of this License. But first, please read +. diff --git a/Makefile b/Makefile index 8b5fc47f..311b6bc4 100644 --- a/Makefile +++ b/Makefile @@ -15,7 +15,12 @@ APP = app TEST = tests test: - $(PYTHON) `which py.test` -s -v $(TEST) - + pytest -v $(TEST) --cov-report term --cov-report xml --cov=$(APP) lint: - pylint $(APP) || true + pylint $(APP) + +fmt: + invoke fmt + +check-fmt: + invoke check --fmt --sort diff --git a/Pipfile b/Pipfile index 104c27c8..79c1452b 100644 --- a/Pipfile +++ b/Pipfile @@ -4,18 +4,45 @@ url = "https://pypi.org/simple" verify_ssl = true [dev-packages] +async-asgi-testclient = "*" +async_generator = "*" +asyncmock = "*" bandit = "*" -pytest = "*" +black = "==19.10b0" +coveralls = "*" +importlib-metadata = {version = "*",markers = "python_version<'3.8'"} +invoke = "*" +isort = "*" pylint = "*" +pytest = "*" +pytest-asyncio = "*" +pytest-cov = "*" +responses = "*" [packages] -flask = "*" -python-dotenv = "*" -requests = "*" -gunicorn = "*" -flask-cors = "*" +aiocache = {extras = ["redis"],version = "*"} +aiofiles = "*" +aiohttp = "*" +asyncache = "*" cachetools = "*" +dataclasses = {version = "*",markers = "python_version<'3.7'"} +fastapi = "*" +gunicorn = "*" +idna_ssl = {version = "*",markers = "python_version<'3.7'"} +pydantic = {extras = ["dotenv"],version = "*"} python-dateutil = "*" +requests = "*" +scout-apm = "*" +sentry-sdk = "*" +uvicorn = {extras = ["standard"],version = "*"} [requires] python_version = "3.8" + +[scripts] +dev = "uvicorn app.main:APP --reload --log-level=debug" +start = "uvicorn app.main:APP" +fmt = "invoke fmt" +sort = "invoke sort" +lint = "invoke lint" +test = "invoke test" diff --git a/Pipfile.lock b/Pipfile.lock index bcc795ad..5449baf5 100644 --- a/Pipfile.lock +++ b/Pipfile.lock @@ -1,7 +1,7 @@ { "_meta": { "hash": { - "sha256": "3ca964b855d418f59464ea8c7de126e18ab3f8ff5c7142d774468f95d9a1156c" + "sha256": "1dceb5f0f766cd3408968526b71d1fc25e2ac779e4d36824950438e87620ec54" }, "pipfile-spec": 6, "requires": { @@ -16,20 +16,162 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>= '3.5'", + "version": "==1.26.3" }, - "zipp": { + "wrapt": { "hashes": [ - "sha256:aa36550ff0c0b7ef7fa639055d797116ee891440eac1a56f378e2d3179e0320b", - "sha256:c599e4d75c98f6798c509911d08a22e6c021d074469042177c8c86fb92eefd96" + "sha256:b62ffa81fb85f4332a4f609cab4ac40709470da05643a082ec1eb88e6d9b97d7" ], - "version": "==3.1.0" + "version": "==1.12.1" } } } diff --git a/Procfile b/Procfile index a46b58e3..dab8203d 100644 --- a/Procfile +++ b/Procfile @@ -1 +1 @@ -web: gunicorn app:create_app\(\) \ No newline at end of file +web: gunicorn app.main:APP -w 2 -k uvicorn.workers.UvicornWorker diff --git a/README.md b/README.md index c50ac8be..7c3024ed 100644 --- a/README.md +++ b/README.md @@ -1,24 +1,102 @@ -# coronavirus-tracker (API) +

+ Coronavirus Tracker API +

-> This is a fast (< 200ms) and basic API for tracking development of the new coronavirus (COVID-19, SARS-CoV-2). It's written in python using 🍼 Flask. +> Provides up-to-date data about Coronavirus outbreak. Includes numbers about confirmed cases, deaths and recovered. +Support multiple data-sources. ![Travis build](https://api.travis-ci.com/ExpDev07/coronavirus-tracker-api.svg?branch=master) +[![Coverage Status](https://coveralls.io/repos/github/ExpDev07/coronavirus-tracker-api/badge.svg?branch=master)](https://coveralls.io/github/ExpDev07/coronavirus-tracker-api?branch=master) +[![License](https://img.shields.io/github/license/ExpDev07/coronavirus-tracker-api)](LICENSE.md) [![All Contributors](https://img.shields.io/badge/all_contributors-1-orange.svg?style=flat-square)](#contributors-) -![GitHub stars](https://img.shields.io/github/stars/ExpDev07/coronavirus-tracker-api) -![GitHub forks](https://img.shields.io/github/forks/ExpDev07/coronavirus-tracker-api) -![GitHub last commit](https://img.shields.io/github/last-commit/ExpDev07/coronavirus-tracker-api) -![GitHub pull requests](https://img.shields.io/github/issues-pr/ExpDev07/coronavirus-tracker-api) -![GitHub issues](https://img.shields.io/github/issues/ExpDev07/coronavirus-tracker-api) +[![GitHub stars](https://img.shields.io/github/stars/ExpDev07/coronavirus-tracker-api)](https://github.com/ExpDev07/coronavirus-tracker-api/stargazers) +[![GitHub forks](https://img.shields.io/github/forks/ExpDev07/coronavirus-tracker-api)](https://github.com/ExpDev07/coronavirus-tracker-api/network/members) +[![GitHub last commit](https://img.shields.io/github/last-commit/ExpDev07/coronavirus-tracker-api)](https://github.com/ExpDev07/coronavirus-tracker-api/commits/master) +[![GitHub pull requests](https://img.shields.io/github/issues-pr/ExpDev07/coronavirus-tracker-api)](https://github.com/ExpDev07/coronavirus-tracker-api/pulls) +[![GitHub issues](https://img.shields.io/github/issues/ExpDev07/coronavirus-tracker-api)](https://github.com/ExpDev07/coronavirus-tracker-api/issues) +[![Total alerts](https://img.shields.io/lgtm/alerts/g/ExpDev07/coronavirus-tracker-api.svg?logo=lgtm&logoWidth=18)](https://lgtm.com/projects/g/ExpDev07/coronavirus-tracker-api/alerts/) +[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black) [![Tweet](https://img.shields.io/twitter/url?url=https%3A%2F%2Fgithub.com%2FExpDev07%2Fcoronavirus-tracker-api)](https://twitter.com/intent/tweet?text=COVID19%20Live%20Tracking%20API:%20&url=https%3A%2F%2Fgithub.com%2FExpDev07%2Fcoronavirus-tracker-api) -## Endpoints +**Live global stats (provided by [fight-covid19/bagdes](https://github.com/fight-covid19/bagdes)) from this API:** -All requests must be made to the base url: ``https://coronavirus-tracker-api.herokuapp.com/v2/`` (e.g: https://coronavirus-tracker-api.herokuapp.com/v2/locations). You can try them out in your browser to further inspect responses. +![Covid-19 Confirmed](https://covid19-badges.herokuapp.com/confirmed/latest) +![Covid-19 Recovered](https://covid19-badges.herokuapp.com/recovered/latest) +![Covid-19 Deaths](https://covid19-badges.herokuapp.com/deaths/latest) + +## New York Times is now available as a source! + +**Specify source parameter with ?source=nyt. NYT also provides a timeseries! To view timelines of cases by US counties use ?source=nyt&timelines=true** + +## Recovered cases showing 0 + +**JHU (our main data provider) [no longer provides data for amount of recoveries](https://github.com/CSSEGISandData/COVID-19/issues/1250), and as a result, the API will be showing 0 for this statistic. Apologies for any inconvenience. Hopefully we'll be able to find an alternative data-source that offers this.** + +## Available data-sources: + +Currently 3 different data-sources are available to retrieve the data: + +* **jhu** - https://github.com/CSSEGISandData/COVID-19 - Worldwide Data repository operated by the Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE). + +* **csbs** - https://www.csbs.org/information-covid-19-coronavirus - U.S. County data that comes from the Conference of State Bank Supervisors. + +* **nyt** - https://github.com/nytimes/covid-19-data - The New York Times is releasing a series of data files with cumulative counts of coronavirus cases in the United States. This API provides the timeseries at the US county level. + +__jhu__ data-source will be used as a default source if you don't specify a *source parameter* in your request. + +## API Reference + +All endpoints are located at ``coronavirus-tracker-api.herokuapp.com/v2/`` and are accessible via https. For instance: you can get data per location by using this URL: +*[https://coronavirus-tracker-api.herokuapp.com/v2/locations](https://coronavirus-tracker-api.herokuapp.com/v2/locations)* + +You can open the URL in your browser to further inspect the response. Or you can make this curl call in your terminal to see the prettified response: + +``` +curl https://coronavirus-tracker-api.herokuapp.com/v2/locations | json_pp +``` + +### Swagger/OpenAPI + +Consume our API through [our super awesome and interactive SwaggerUI](https://coronavirus-tracker-api.herokuapp.com/) (on mobile, use the [mobile friendly ReDocs](https://coronavirus-tracker-api.herokuapp.com/docs) instead for the best experience). + + +The [OpenAPI](https://swagger.io/docs/specification/about/) json definition can be downloaded at https://coronavirus-tracker-api.herokuapp.com/openapi.json + +## API Endpoints + +### Sources Endpoint + +Getting the data-sources that are currently available to Coronavirus Tracker API to retrieve the data of the pandemic. + +```http +GET /v2/sources +``` + +__Sample response__ +```json +{ + "sources": [ + "jhu", + "csbs", + "nyt" + ] +} +``` + +### Latest Endpoint + +Getting latest amount of total confirmed cases, deaths, and recovered. -### Getting latest amount of total confirmed cases, deaths, and recoveries. ```http GET /v2/latest ``` + +__Query String Parameters__ +| __Query string parameter__ | __Description__ | __Type__ | +| -------------------------- | -------------------------------------------------------------------------------- | -------- | +| source | The data-source where data will be retrieved from *(jhu/csbs/nyt)*. Default is *jhu* | String | + +__Sample response__ ```json { "latest": { @@ -29,18 +107,87 @@ GET /v2/latest } ``` -### Getting all locations. +### Locations Endpoint + +Getting latest amount of confirmed cases, deaths, and recovered per location. + +#### The Location Object +```http +GET /v2/locations/:id +``` + +__Path Parameters__ +| __Path parameter__ | __Required/Optional__ | __Description__ | __Type__ | +| ------------------ | --------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | -------- | +| id | OPTIONAL | The unique location id for which you want to call the Locations Endpoint. The list of valid location IDs (:id) can be found in the locations response: ``/v2/locations`` | Integer | + +__Query String Parameters__ +| __Query string parameter__ | __Description__ | __Type__ | +| -------------------------- | -------------------------------------------------------------------------------- | -------- | +| source | The data-source where data will be retrieved from *(jhu/csbs/nyt)*. Default is *jhu* | String | + +#### Example Request +```http +GET /v2/locations/39 +``` + +__Sample response__ +```json +{ + "location": { + "id": 39, + "country": "Norway", + "country_code": "NO", + "country_population": 5009150, + "province": "", + "county": "", + "last_updated": "2020-03-21T06:59:11.315422Z", + "coordinates": { }, + "latest": { }, + "timelines": { + "confirmed": { + "latest": 1463, + "timeline": { + "2020-03-16T00:00:00Z": 1333, + "2020-03-17T00:00:00Z": 1463 + } + }, + "deaths": { }, + "recovered": { } + } + } +} +``` + +#### List of all locations ```http GET /v2/locations ``` + +__Query String Parameters__ +| __Query string parameter__ | __Description__ | __Type__ | +| -------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------ | -------- | +| source | The data-source where data will be retrieved from.
__Value__ can be: *jhu/csbs/nyt*. __Default__ is *jhu* | String | +| country_code | The ISO ([alpha-2 country_code](https://en.wikipedia.org/wiki/ISO_3166-1_alpha-2)) to the Country/Province for which you're calling the Endpoint | String | +| timelines | To set the visibility of timelines (*daily tracking*).
__Value__ can be: *0/1*. __Default__ is *0* (timelines are not visible) | Integer | + +__Sample response__ ```json { + "latest": { + "confirmed": 272166, + "deaths": 11299, + "recovered": 87256 + }, "locations": [ { "id": 0, "country": "Thailand", "country_code": "TH", + "country_population": 67089500, "province": "", + "county": "", + "last_updated": "2020-03-21T06:59:11.315422Z", "coordinates": { "latitude": "15", "longitude": "101" @@ -56,6 +203,8 @@ GET /v2/locations "country": "Norway", "country_code": "NO", "province": "", + "county": "", + "last_updated": "2020-03-21T06:59:11.315422Z", "coordinates": { "latitude": "60.472", "longitude": "8.4689" @@ -70,62 +219,162 @@ GET /v2/locations } ``` -Additionally, you can also filter by country ([alpha-2 country_code](https://en.wikipedia.org/wiki/ISO_3166-1_alpha-2)). +__Response definitions__ +| __Response Item__ | __Description__ | __Type__ | +| ---------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------ | -------- | +| {latest} | The total amount of confirmed cases, deaths and recovered for all the locations | Object | +| {latest}/confirmed | The up-to-date total number of confirmed cases for all the locations within the data-source | Integer | +| {latest}/deaths | The up-to-date total amount of deaths for all the locations within the data-source | Integer | +| {latest}/recovered | The up-to-date total amount of recovered for all the locations within the data-source | Integer | +| {locations} | The collection of locations contained within the data-source | Object | +| {location} | Information that identifies a location | Object | +| {latest} | The amount of confirmed cases, deaths and recovered related to the specific location | Object | +| {locations}/{location}/{latest}/confirmed | The up-to-date number of confirmed cases related to the specific location | Integer | +| {locations}/{location}/{latest}/deaths | The up-to-date number of deaths related to the specific location | Integer | +| {locations}/{location}/{latest}/recovered | The up-to-date number of recovered related to the specific location | Integer | +| {locations}/{location}/id | The location id. This unique id is assigned to the location by the data-source. | Integer | +| {locations}/{location}/country | The Country name | String | +| {locations}/{location}/country_code | The [ISO alpha-2 country_code](https://en.wikipedia.org/wiki/ISO_3166-1_alpha-2) Country code for the location. | String | +| {locations}/{location}/province | The province where the location belongs to. (Used for US locations coming from __csbs data-source__.
__Empty__ when *jhu data-source* is used | String | +| {locations}/{location}/{coordinates}/latitude | The location latitude | Float | +| {locations}/{location}/{coordinates}/longitude | The location longitude | Float | + + +### Example Requests with parameters + +__Parameter: country_code__ + +Getting data for the Country specified by the *country_code parameter*, in this case Italy - IT + ```http -GET /v2/locations?country_code=US +GET /v2/locations?country_code=IT ``` -Include timelines. -```http -GET /v2/locations?timelines=1 +__Sample Response__ +```json +{ + "latest": { + "confirmed": 59138, + "deaths": 5476, + "recovered": 7024 + }, + "locations": [ + { + "id": 16, + "country": "Italy", + "country_code": "IT", + "country_population": 60340328, + "province": "", + "county": "", + "last_updated": "2020-03-23T13:32:23.913872Z", + "coordinates": { + "latitude": "43", + "longitude": "12" + }, + "latest": { + "confirmed": 59138, + "deaths": 5476, + "recovered": 7024 + } + } + ] +} ``` -### Getting a specific location (includes timelines by default). +__Parameter: source__ + +Getting the data from the data-source specified by the *source parameter*, in this case [csbs](https://www.csbs.org/information-covid-19-coronavirus) + + ```http -GET /v2/locations/:id +GET /v2/locations?source=csbs ``` + +__Sample Response__ ```json { - "location": { - "id": 39, - "country": "Norway", - "country_code": "NO", - "province": "", - "coordinates": { }, - "latest": { }, - "timelines": { - "confirmed": { - "latest": 1463, - "timeline": { - "2020-03-16T00:00:00Z": 1333, - "2020-03-17T00:00:00Z": 1463 - } + "latest": { + "confirmed": 7596, + "deaths": 43, + "recovered": 0 + }, + "locations": [ + { + "id": 0, + "country": "US", + "country_code": "US", + "country_population": 310232863, + "province": "New York", + "state": "New York", + "county": "New York", + "last_updated": "2020-03-21T14:00:00Z", + "coordinates": { + "latitude": 40.71455, + "longitude": -74.00714 + }, + "latest": { + "confirmed": 6211, + "deaths": 43, + "recovered": 0 + } + }, + { + "id": 1, + "country": "US", + "country_code": "US", + "country_population": 310232863, + "province": "New York", + "state": "New York", + "county": "Westchester", + "last_updated": "2020-03-21T14:00:00Z", + "coordinates": { + "latitude": 41.16319759, + "longitude": -73.7560629 + }, + "latest": { + "confirmed": 1385, + "deaths": 0, + "recovered": 0 }, - "deaths": { }, - "recovered": { } } - } + ] } ``` -Exclude timelines. +__Parameter: timelines__ + +Getting the data for all the locations including the daily tracking of confirmed cases, deaths and recovered per location. + ```http -GET /v2/locations?timelines=0 +GET /v2/locations?timelines=1 +``` +Explore the response by opening the URL in your browser [https://coronavirus-tracker-api.herokuapp.com/v2/locations?timelines=1](https://coronavirus-tracker-api.herokuapp.com/v2/locations?timelines=1) or make the following curl call in your terminal: + ``` +curl https://coronavirus-tracker-api.herokuapp.com/v2/locations?timelines=1 | json_pp +``` + +__NOTE:__ Timelines tracking starts from day 22nd January 2020 and ends to the last available day in the data-source. -## Data -The data comes from the [2019 Novel Coronavirus (nCoV) Data Repository, provided -by JHU CCSE](https://github.com/CSSEGISandData/2019-nCoV). It is -programmatically retrieved, re-formatted and stored in the cache for one hour. ## Wrappers -These are the available API wrappers created by the community. They are not neccecarily maintained by any of this project's authors or contributors. +These are the available API wrappers created by the community. They are not necessarily maintained by any of this project's authors or contributors. + +### PHP + +* [CovidPHP by @o-ba](https://github.com/o-ba/covid-php). + +### Golang + +* [Go-corona by @itsksaurabh](https://github.com/itsksaurabh/go-corona). ### C# -* [Coronavirus tracker API Wrapper by @Abdirahiim](https://github.com/Abdirahiim/covidtrackerapiwrapper). +* [CovidSharp by @Abdirahiim](https://github.com/Abdirahiim/covidtrackerapiwrapper) +* [Covid19Tracker.NET by @egbakou](https://github.com/egbakou/Covid19Tracker.NET) +* [CovidDotNet by @degant](https://github.com/degant/CovidDotNet) ### Python @@ -143,35 +392,97 @@ These are the available API wrappers created by the community. They are not necc * [covid19-data-ruby by @jaerodyne](https://github.com/jaerodyne/covid19-data-ruby). +### Lua + +* [lua-covid-data by @imolein](https://codeberg.org/imo/lua-covid-data). + ## Prerequisites You will need the following things properly installed on your computer. * [Python 3](https://www.python.org/downloads/) (with pip) -* [Flask](https://pypi.org/project/Flask/) * [pipenv](https://pypi.org/project/pipenv/) ## Installation * `git clone https://github.com/ExpDev07/coronavirus-tracker-api.git` * `cd coronavirus-tracker-api` -* `pipenv shell` -* `pipenv install` + +1. Make sure you have [`python3.8` installed and on your `PATH`](https://docs.python-guide.org/starting/installation/). +2. [Install the `pipenv` dependency manager](https://pipenv.readthedocs.io/en/latest/install/#installing-pipenv) + * with [pipx](https://pipxproject.github.io/pipx/) `$ pipx install pipenv` + * with [Homebrew/Linuxbrew](https://pipenv.readthedocs.io/en/latest/install/#homebrew-installation-of-pipenv) `$ brew install pipenv` + * with [pip/pip3 directly](https://pipenv.readthedocs.io/en/latest/install/#pragmatic-installation-of-pipenv) `$ pip install --user pipenv` +3. Create virtual environment and install all dependencies `$ pipenv sync --dev` +4. Activate/enter the virtual environment `$ pipenv shell` + +And don't despair if don't get the python setup working on the first try. No one did. Guido got pretty close... once. But that's another story. Good luck. ## Running / Development -* `flask run` -* Visit your app at [http://localhost:5000](http://localhost:5000). +For a live reloading on code changes. + +* `pipenv run dev` + +Without live reloading. + +* `pipenv run start` + +Visit your app at [http://localhost:8000](http://localhost:8000). + +Alternatively run our API with Docker. ### Running Tests +> [pytest](https://docs.pytest.org/en/latest/) + +```bash +pipenv run test +``` -* `make test` ### Linting +> [pylint](https://www.pylint.org/) + +```bash +pipenv run lint +``` + +### Formatting +> [black](https://black.readthedocs.io/en/stable/) + +```bash +pipenv run fmt +``` + +### Update requirements files -* `make lint` +```bash +invoke generate-reqs +``` + +[Pipfile.lock](./Pipfile.lock) will be automatically updated during `pipenv install`. + +### Docker + +Our Docker image is based on [tiangolo/uvicorn-gunicorn-fastapi/](https://hub.docker.com/r/tiangolo/uvicorn-gunicorn-fastapi/). + +```bash +invoke docker --build +``` -### Building +Run with `docker run` or `docker-compose` + +#### Alternate Docker images + +If a full `gunicorn` deployment is unnecessary or [impractical on your hardware](https://fastapi.tiangolo.com/deployment/#raspberry-pi-and-other-architectures) consider using our single instance [`Uvicorn`](https://www.uvicorn.org/) based [Dockerfile](uvicorn.Dockerfile). + + +### Invoke + +Additional developer commands can be run by calling them with the [python `invoke` task runner](http://www.pyinvoke.org/). +```bash +invoke --list +``` ### Deploying @@ -188,6 +499,24 @@ Thanks goes to these wonderful people ([emoji key](https://allcontributors.org/d
bjarkimg
💬
Bost
📖
GRIBOK
💻 ⚠️ +
Oliver Thamm
📖 +
Mauro M.
📖 +
JKSenthil
💻 📖 ⚠️ + + +
SeanCena
💻 📖 ⚠️ +
Abdirahiim Yassin
📖 🔧 📦 +
Darío Hereñú
📖 +
Oliver
📖 +
carmelag
📖 +
Gabriel
💻 🚇 ⚠️ 📖 +
Kodjo Laurent Egbakou
📖 🔧 📦 + + +
Turreted
💻 +
Ibtida Bhuiyan
💻 📖 +
James Gray
💻 +
Nischal Shankar
💻 📖 @@ -197,4 +526,4 @@ Thanks goes to these wonderful people ([emoji key](https://allcontributors.org/d ## License -The data is available to the public strictly for educational and academic research purposes. Please link to this repo somewhere in your project :). +See [LICENSE.md](LICENSE.md) for the license. Please link to this repo somewhere in your project :). diff --git a/app/__init__.py b/app/__init__.py index 70c1deb7..7a7badd2 100644 --- a/app/__init__.py +++ b/app/__init__.py @@ -1,28 +1,11 @@ -from flask import Flask -from flask_cors import CORS +""" +Corona Virus Tracker API +~~~~~~~~~~~~~~~~~~~~~~~~ +API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. +""" +import logging # See PEP396. -__version__ = '2.0' +__version__ = "2.0.3" -def create_app(): - """ - Construct the core application. - """ - - # Create flask app with CORS enabled. - app = Flask(__name__) - CORS(app) - - # Set app config from settings. - app.config.from_pyfile('config/settings.py'); - - with app.app_context(): - # Import routes. - from . import routes - - # Register api endpoints. - app.register_blueprint(routes.api_v1) - app.register_blueprint(routes.api_v2) - - # Return created app. - return app +logging.basicConfig(level=logging.INFO) diff --git a/app/caches.py b/app/caches.py new file mode 100644 index 00000000..df95f508 --- /dev/null +++ b/app/caches.py @@ -0,0 +1,52 @@ +"""app.caches.py""" +import functools +import logging +from typing import Union + +import aiocache + +from .config import get_settings + +LOGGER = logging.getLogger(name="app.caches") + +SETTINGS = get_settings() + +if SETTINGS.rediscloud_url: + REDIS_URL = SETTINGS.rediscloud_url + LOGGER.info("Using Rediscloud") +else: + REDIS_URL = SETTINGS.local_redis_url + LOGGER.info("Using Local Redis") + + +@functools.lru_cache() +def get_cache(namespace) -> Union[aiocache.RedisCache, aiocache.SimpleMemoryCache]: + """Retunr """ + if REDIS_URL: + LOGGER.info("using RedisCache") + return aiocache.RedisCache( + endpoint=REDIS_URL.host, + port=REDIS_URL.port, + password=REDIS_URL.password, + namespace=namespace, + create_connection_timeout=5, + ) + LOGGER.info("using SimpleMemoryCache") + return aiocache.SimpleMemoryCache(namespace=namespace) + + +async def check_cache(data_id: str, namespace: str = None): + """Check the data of a cache given an id.""" + cache = get_cache(namespace) + result = await cache.get(data_id, None) + LOGGER.info(f"{data_id} cache pulled") + await cache.close() + return result + + +async def load_cache(data_id: str, data, namespace: str = None, cache_life: int = 3600): + """Load data into the cache.""" + cache = get_cache(namespace) + await cache.set(data_id, data, ttl=cache_life) + LOGGER.info(f"{data_id} cache loaded") + await cache.close() diff --git a/app/config.py b/app/config.py new file mode 100644 index 00000000..377ebc13 --- /dev/null +++ b/app/config.py @@ -0,0 +1,33 @@ +"""app.config.py""" +import functools +import logging + +from pydantic import AnyUrl, BaseSettings + +CFG_LOGGER = logging.getLogger("app.config") + + +class _Settings(BaseSettings): + port: int = 5000 + rediscloud_url: AnyUrl = None + local_redis_url: AnyUrl = None + # Scout APM + scout_name: str = None + # Sentry + sentry_dsn: str = None + + +@functools.lru_cache() +def get_settings(**kwargs) -> BaseSettings: + """ + Read settings from the environment or `.env` file. + https://pydantic-docs.helpmanual.io/usage/settings/#dotenv-env-support + + Usage: + import app.config + + settings = app.config.get_settings(_env_file="") + port_number = settings.port + """ + CFG_LOGGER.info("Loading Config settings from Environment ...") + return _Settings(**kwargs) diff --git a/app/config/__init__.py b/app/config/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/app/config/settings.py b/app/config/settings.py deleted file mode 100644 index ce6617a8..00000000 --- a/app/config/settings.py +++ /dev/null @@ -1,10 +0,0 @@ -import os - -# Load enviroment variables from .env file. -from dotenv import load_dotenv -load_dotenv() - -""" -The port to serve the app application on. -""" -PORT = int(os.getenv('PORT', 5000)) \ No newline at end of file diff --git a/app/coordinates.py b/app/coordinates.py index 93b5bd9e..be972c6e 100644 --- a/app/coordinates.py +++ b/app/coordinates.py @@ -1,3 +1,6 @@ +"""app.coordinates.py""" + + class Coordinates: """ A position on earth using decimal coordinates (latitude and longitude). @@ -14,10 +17,7 @@ def serialize(self): :returns: The serialized coordinates. :rtype: dict """ - return { - 'latitude' : self.latitude, - 'longitude': self.longitude - } + return {"latitude": self.latitude, "longitude": self.longitude} def __str__(self): - return 'lat: %s, long: %s' % (self.latitude, self.longitude) \ No newline at end of file + return "lat: %s, long: %s" % (self.latitude, self.longitude) diff --git a/app/data/__init__.py b/app/data/__init__.py index e69de29b..60a75dac 100644 --- a/app/data/__init__.py +++ b/app/data/__init__.py @@ -0,0 +1,21 @@ +"""app.data""" +from ..services.location.csbs import CSBSLocationService +from ..services.location.jhu import JhuLocationService +from ..services.location.nyt import NYTLocationService + +# Mapping of services to data-sources. +DATA_SOURCES = { + "jhu": JhuLocationService(), + "csbs": CSBSLocationService(), + "nyt": NYTLocationService(), +} + + +def data_source(source): + """ + Retrieves the provided data-source service. + + :returns: The service. + :rtype: LocationService + """ + return DATA_SOURCES.get(source.lower()) diff --git a/app/data/geonames_population_mappings.json b/app/data/geonames_population_mappings.json new file mode 100644 index 00000000..7b293caa --- /dev/null +++ b/app/data/geonames_population_mappings.json @@ -0,0 +1,252 @@ +{ + "AD": 77006, + "AE": 9630959, + "AF": 37172386, + "AG": 96286, + "AI": 13254, + "AL": 2866376, + "AM": 2951776, + "AO": 30809762, + "AQ": null, + "AR": 44494502, + "AS": 55465, + "AT": 8847037, + "AU": 24992369, + "AW": 105845, + "AX": 26711, + "AZ": 9942334, + "BA": 3323929, + "BB": 286641, + "BD": 161356039, + "BE": 11422068, + "BF": 19751535, + "BG": 7000039, + "BH": 1569439, + "BI": 11175378, + "BJ": 11485048, + "BL": 8450, + "BM": 63968, + "BN": 428962, + "BO": 11353142, + "BQ": 18012, + "BR": 209469333, + "BS": 385640, + "BT": 754394, + "BV": null, + "BW": 2254126, + "BY": 9485386, + "BZ": 383071, + "CA": 37058856, + "CC": 628, + "CD": 84068091, + "CF": 4666377, + "CG": 5244363, + "CH": 8516543, + "CI": 25069229, + "CK": 21388, + "CL": 18729160, + "CM": 25216237, + "CN": 1392730000, + "CO": 49648685, + "CR": 4999441, + "CU": 11338138, + "CV": 543767, + "CW": 159849, + "CX": 1500, + "CY": 1189265, + "CZ": 10625695, + "DE": 82927922, + "DJ": 958920, + "DK": 5797446, + "DM": 71625, + "DO": 10627165, + "DZ": 42228429, + "EC": 17084357, + "EE": 1320884, + "EG": 98423595, + "EH": 273008, + "ER": null, + "ES": 46723749, + "ET": 109224559, + "FI": 5518050, + "FJ": 883483, + "FK": 2638, + "FM": 112640, + "FO": 48497, + "FR": 66987244, + "GA": 2119275, + "GB": 66488991, + "GD": 111454, + "GE": 3731000, + "GF": 195506, + "GG": 65228, + "GH": 29767108, + "GI": 33718, + "GL": 56025, + "GM": 2280102, + "GN": 12414318, + "GP": 443000, + "GQ": 1308974, + "GR": 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"MP": 56882, + "MQ": 432900, + "MR": 4403319, + "MS": 9341, + "MT": 483530, + "MU": 1265303, + "MV": 515696, + "MW": 17563749, + "MX": 126190788, + "MY": 31528585, + "MZ": 29495962, + "NA": 2448255, + "NC": 284060, + "NE": 22442948, + "NF": 1828, + "NG": 195874740, + "NI": 6465513, + "NL": 17231017, + "NO": 5314336, + "NP": 28087871, + "NR": 12704, + "NU": 2166, + "NZ": 4885500, + "OM": 4829483, + "PA": 4176873, + "PE": 31989256, + "PF": 277679, + "PG": 8606316, + "PH": 106651922, + "PK": 212215030, + "PL": 37978548, + "PM": 7012, + "PN": 46, + "PR": 3195153, + "PS": 4569087, + "PT": 10281762, + "PW": 17907, + "PY": 6956071, + "QA": 2781677, + "RE": 776948, + "RO": 19473936, + "RS": 6982084, + "RU": 144478050, + "RW": 12301939, + "SA": 33699947, + "SB": 652858, + "SC": 96762, + "SD": 41801533, + "SE": 10183175, + "SG": 5638676, + "SH": 7460, + "SI": 2067372, + "SJ": 2550, + "SK": 5447011, + "SL": 7650154, + "SM": 33785, + "SN": 15854360, + "SO": 15008154, + "SR": 575991, + "SS": 8260490, + "ST": 197700, + "SV": 6420744, + "SX": 40654, + "SY": 16906283, + "SZ": 1136191, + "TC": 37665, + "TD": 15477751, + "TF": 140, + "TG": 7889094, + "TH": 69428524, + "TJ": 9100837, + "TK": 1466, + "TL": 1267972, + "TM": 5850908, + "TN": 11565204, + "TO": 103197, + "TR": 82319724, + "TT": 1389858, + "TV": 11508, + "TW": 22894384, + "TZ": 56318348, + "UA": 44622516, + "UG": 42723139, + "UM": null, + "US": 327167434, + "UY": 3449299, + "UZ": 32955400, + "VA": 921, + "VC": 110211, + "VE": 28870195, + "VG": 29802, + "VI": 106977, + "VN": 95540395, + "VU": 292680, + "WF": 16025, + "WS": 196130, + "XK": 1845300, + "YE": 28498687, + "YT": 159042, + "ZA": 57779622, + "ZM": 17351822, + "ZW": 14439018 +} \ No newline at end of file diff --git a/app/io.py b/app/io.py new file mode 100644 index 00000000..2a563b15 --- /dev/null +++ b/app/io.py @@ -0,0 +1,65 @@ +"""app.io.py""" +import json +import pathlib +from typing import Dict, List, Union + +import aiofiles + +HERE = pathlib.Path(__file__) +DATA = HERE.joinpath("..", "data").resolve() + + +def save( + name: str, + content: Union[str, Dict, List], + write_mode: str = "w", + indent: int = 2, + **json_dumps_kwargs, +) -> pathlib.Path: + """Save content to a file. If content is a dictionary, use json.dumps().""" + path = DATA / name + if isinstance(content, (dict, list)): + content = json.dumps(content, indent=indent, **json_dumps_kwargs) + with open(DATA / name, mode=write_mode) as f_out: + f_out.write(content) + return path + + +def load(name: str, **json_kwargs) -> Union[str, Dict, List]: + """Loads content from a file. If file ends with '.json', call json.load() and return a Dictionary.""" + path = DATA / name + with open(path) as f_in: + if path.suffix == ".json": + return json.load(f_in, **json_kwargs) + return f_in.read() + + +class AIO: + """Asynsc compatible file io operations.""" + + @classmethod + async def save( + cls, + name: str, + content: Union[str, Dict, List], + write_mode: str = "w", + indent: int = 2, + **json_dumps_kwargs, + ): + """Save content to a file. If content is a dictionary, use json.dumps().""" + path = DATA / name + if isinstance(content, (dict, list)): + content = json.dumps(content, indent=indent, **json_dumps_kwargs) + async with aiofiles.open(DATA / name, mode=write_mode) as f_out: + await f_out.write(content) + return path + + @classmethod + async def load(cls, name: str, **json_kwargs) -> Union[str, Dict, List]: + """Loads content from a file. If file ends with '.json', call json.load() and return a Dictionary.""" + path = DATA / name + async with aiofiles.open(path) as f_in: + content = await f_in.read() + if path.suffix == ".json": + content = json.loads(content, **json_kwargs) + return content diff --git a/app/location.py b/app/location.py deleted file mode 100644 index 9d552371..00000000 --- a/app/location.py +++ /dev/null @@ -1,64 +0,0 @@ -from .coordinates import Coordinates -from .utils import countrycodes - -class Location: - """ - A location in the world affected by the coronavirus. - """ - - def __init__(self, id, country, province, coordinates, confirmed, deaths, recovered): - # General info. - self.id = id - self.country = country.strip() - self.province = province.strip() - self.coordinates = coordinates - - # Data. - self.confirmed = confirmed - self.deaths = deaths - self.recovered = recovered - - - @property - def country_code(self): - """ - Gets the alpha-2 code represention of the country. Returns 'XX' if none is found. - """ - return (countrycodes.country_code(self.country) or countrycodes.default_code).upper() - - def serialize(self, timelines = False): - """ - Serializes the location into a dict. - - :param timelines: Whether to include the timelines. - :returns: The serialized location. - :rtype: dict - """ - serialized = { - # General info. - 'id' : self.id, - 'country' : self.country, - 'province' : self.province, - 'country_code': self.country_code, - - # Coordinates. - 'coordinates': self.coordinates.serialize(), - - # Latest data. - 'latest': { - 'confirmed': self.confirmed.latest, - 'deaths' : self.deaths.latest, - 'recovered': self.recovered.latest - }, - } - - # Whether to include the timelines or not. - if timelines: - serialized.update({ 'timelines': { - 'confirmed': self.confirmed.serialize(), - 'deaths' : self.deaths.serialize(), - 'recovered': self.recovered.serialize(), - }}) - - # Return the serialized location. - return serialized \ No newline at end of file diff --git a/app/location/__init__.py b/app/location/__init__.py new file mode 100644 index 00000000..1da5e9e5 --- /dev/null +++ b/app/location/__init__.py @@ -0,0 +1,124 @@ +"""app.location""" +from ..coordinates import Coordinates +from ..utils import countries +from ..utils.populations import country_population + + +# pylint: disable=redefined-builtin,invalid-name +class Location: # pylint: disable=too-many-instance-attributes + """ + A location in the world affected by the coronavirus. + """ + + def __init__( + self, id, country, province, coordinates, last_updated, confirmed, deaths, recovered, + ): # pylint: disable=too-many-arguments + # General info. + self.id = id + self.country = country.strip() + self.province = province.strip() + self.coordinates = coordinates + + # Last update. + self.last_updated = last_updated + + # Statistics. + self.confirmed = confirmed + self.deaths = deaths + self.recovered = recovered + + @property + def country_code(self): + """ + Gets the alpha-2 code represention of the country. Returns 'XX' if none is found. + + :returns: The country code. + :rtype: str + """ + return (countries.country_code(self.country) or countries.DEFAULT_COUNTRY_CODE).upper() + + @property + def country_population(self): + """ + Gets the population of this location. + + :returns: The population. + :rtype: int + """ + return country_population(self.country_code) + + def serialize(self): + """ + Serializes the location into a dict. + + :returns: The serialized location. + :rtype: dict + """ + return { + # General info. + "id": self.id, + "country": self.country, + "country_code": self.country_code, + "country_population": self.country_population, + "province": self.province, + # Coordinates. + "coordinates": self.coordinates.serialize(), + # Last updated. + "last_updated": self.last_updated, + # Latest data (statistics). + "latest": { + "confirmed": self.confirmed, + "deaths": self.deaths, + "recovered": self.recovered, + }, + } + + +class TimelinedLocation(Location): + """ + A location with timelines. + """ + + # pylint: disable=too-many-arguments + def __init__(self, id, country, province, coordinates, last_updated, timelines): + super().__init__( + # General info. + id, + country, + province, + coordinates, + last_updated, + # Statistics (retrieve latest from timelines). + confirmed=timelines.get("confirmed").latest or 0, + deaths=timelines.get("deaths").latest or 0, + recovered=timelines.get("recovered").latest or 0, + ) + + # Set timelines. + self.timelines = timelines + + # pylint: disable=arguments-differ + def serialize(self, timelines=False): + """ + Serializes the location into a dict. + + :param timelines: Whether to include the timelines. + :returns: The serialized location. + :rtype: dict + """ + serialized = super().serialize() + + # Whether to include the timelines or not. + if timelines: + serialized.update( + { + "timelines": { + # Serialize all the timelines. + key: value.serialize() + for (key, value) in self.timelines.items() + } + } + ) + + # Return the serialized location. + return serialized diff --git a/app/location/csbs.py b/app/location/csbs.py new file mode 100644 index 00000000..649e8b22 --- /dev/null +++ b/app/location/csbs.py @@ -0,0 +1,43 @@ +"""app.locations.csbs.py""" +from . import Location + + +class CSBSLocation(Location): + """ + A CSBS (county) location. + """ + + # pylint: disable=too-many-arguments,redefined-builtin + def __init__(self, id, state, county, coordinates, last_updated, confirmed, deaths): + super().__init__( + # General info. + id, + "US", + state, + coordinates, + last_updated, + # Statistics. + confirmed=confirmed, + deaths=deaths, + recovered=0, + ) + + self.state = state + self.county = county + + def serialize(self, timelines=False): # pylint: disable=arguments-differ,unused-argument + """ + Serializes the location into a dict. + + :returns: The serialized location. + :rtype: dict + """ + serialized = super().serialize() + + # Update with new fields. + serialized.update( + {"state": self.state, "county": self.county,} + ) + + # Return the serialized location. + return serialized diff --git a/app/location/nyt.py b/app/location/nyt.py new file mode 100644 index 00000000..ad92212e --- /dev/null +++ b/app/location/nyt.py @@ -0,0 +1,32 @@ +"""app.locations.nyt.py""" +from . import TimelinedLocation + + +class NYTLocation(TimelinedLocation): + """ + A NYT (county) Timelinedlocation. + """ + + # pylint: disable=too-many-arguments,redefined-builtin + def __init__(self, id, state, county, coordinates, last_updated, timelines): + super().__init__(id, "US", state, coordinates, last_updated, timelines) + + self.state = state + self.county = county + + def serialize(self, timelines=False): # pylint: disable=arguments-differ,unused-argument + """ + Serializes the location into a dict. + + :returns: The serialized location. + :rtype: dict + """ + serialized = super().serialize(timelines) + + # Update with new fields. + serialized.update( + {"state": self.state, "county": self.county,} + ) + + # Return the serialized location. + return serialized diff --git a/app/main.py b/app/main.py new file mode 100644 index 00000000..b9aff949 --- /dev/null +++ b/app/main.py @@ -0,0 +1,121 @@ +""" +app.main.py +""" +import logging + +import pydantic +import sentry_sdk +import uvicorn +from fastapi import FastAPI, Request, Response +from fastapi.middleware.cors import CORSMiddleware +from fastapi.middleware.gzip import GZipMiddleware +from fastapi.responses import JSONResponse +from scout_apm.async_.starlette import ScoutMiddleware +from sentry_sdk.integrations.asgi import SentryAsgiMiddleware + +from .config import get_settings +from .data import data_source +from .routers import V1, V2 +from .utils.httputils import setup_client_session, teardown_client_session + +# ############ +# FastAPI App +# ############ +LOGGER = logging.getLogger("api") + +SETTINGS = get_settings() + +if SETTINGS.sentry_dsn: # pragma: no cover + sentry_sdk.init(dsn=SETTINGS.sentry_dsn) + +APP = FastAPI( + title="Coronavirus Tracker", + description=( + "API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak." + " Project page: https://github.com/ExpDev07/coronavirus-tracker-api." + ), + version="2.0.4", + docs_url="/", + redoc_url="/docs", + on_startup=[setup_client_session], + on_shutdown=[teardown_client_session], +) + +# ##################### +# Middleware +####################### + +# Scout APM +if SETTINGS.scout_name: # pragma: no cover + LOGGER.info(f"Adding Scout APM middleware for `{SETTINGS.scout_name}`") + APP.add_middleware(ScoutMiddleware) +else: + LOGGER.debug("No SCOUT_NAME config") + +# Sentry Error Tracking +if SETTINGS.sentry_dsn: # pragma: no cover + LOGGER.info("Adding Sentry middleware") + APP.add_middleware(SentryAsgiMiddleware) + +# Enable CORS. +APP.add_middleware( + CORSMiddleware, + allow_credentials=True, + allow_origins=["*"], + allow_methods=["*"], + allow_headers=["*"], +) +APP.add_middleware(GZipMiddleware, minimum_size=1000) + + +@APP.middleware("http") +async def add_datasource(request: Request, call_next): + """ + Attach the data source to the request.state. + """ + # Retrieve the datas ource from query param. + source = data_source(request.query_params.get("source", default="jhu")) + + # Abort with 404 if source cannot be found. + if not source: + return Response("The provided data-source was not found.", status_code=404) + + # Attach source to request. + request.state.source = source + + # Move on... + LOGGER.debug(f"source provided: {source.__class__.__name__}") + response = await call_next(request) + return response + + +# ################ +# Exception Handler +# ################ + + +@APP.exception_handler(pydantic.error_wrappers.ValidationError) +async def handle_validation_error( + request: Request, exc: pydantic.error_wrappers.ValidationError +): # pylint: disable=unused-argument + """ + Handles validation errors. + """ + return JSONResponse({"message": exc.errors()}, status_code=422) + + +# ################ +# Routing +# ################ + + +# Include routers. +APP.include_router(V1, prefix="", tags=["v1"]) +APP.include_router(V2, prefix="/v2", tags=["v2"]) + + +# Running of app. +if __name__ == "__main__": + uvicorn.run( + "app.main:APP", host="127.0.0.1", port=SETTINGS.port, log_level="info", + ) diff --git a/app/models.py b/app/models.py new file mode 100644 index 00000000..497a4b83 --- /dev/null +++ b/app/models.py @@ -0,0 +1,92 @@ +"""app.models.py""" +from typing import Dict, List + +from pydantic import BaseModel, validator + + +class Latest(BaseModel): + """ + Latest model. + """ + + confirmed: int + deaths: int + recovered: int + + +class LatestResponse(BaseModel): + """ + Response for latest. + """ + + latest: Latest + + +class Timeline(BaseModel): + """ + Timeline model. + """ + + timeline: Dict[str, int] = {} + + @validator("timeline") + @classmethod + def sort_timeline(cls, value): + """Sort the timeline history before inserting into the model""" + return dict(sorted(value.items())) + + @property + def latest(self): + """Get latest available history value.""" + return list(self.timeline.values())[-1] if self.timeline else 0 + + def serialize(self): + """ + Serialize the model into dict + TODO: override dict() instead of using serialize + """ + return {**self.dict(), "latest": self.latest} + + +class Timelines(BaseModel): + """ + Timelines model. + """ + + confirmed: Timeline + deaths: Timeline + recovered: Timeline + + +class Location(BaseModel): + """ + Location model. + """ + + id: int + country: str + country_code: str + country_population: int = None + province: str = "" + county: str = "" + last_updated: str # TODO use datetime.datetime type. + coordinates: Dict + latest: Latest + timelines: Timelines = {} + + +class LocationResponse(BaseModel): + """ + Response for location. + """ + + location: Location + + +class LocationsResponse(BaseModel): + """ + Response for locations. + """ + + latest: Latest + locations: List[Location] = [] diff --git a/app/routers/__init__.py b/app/routers/__init__.py new file mode 100644 index 00000000..2bdd5ee3 --- /dev/null +++ b/app/routers/__init__.py @@ -0,0 +1,3 @@ +"""app.routers""" +from .v1 import V1 +from .v2 import V2 diff --git a/app/routers/v1.py b/app/routers/v1.py new file mode 100644 index 00000000..517bc625 --- /dev/null +++ b/app/routers/v1.py @@ -0,0 +1,51 @@ +"""app.routers.v1.py""" +from fastapi import APIRouter + +from ..services.location.jhu import get_category + +V1 = APIRouter() + + +@V1.get("/all") +async def all_categories(): + """Get all the categories.""" + confirmed = await get_category("confirmed") + deaths = await get_category("deaths") + recovered = await get_category("recovered") + + return { + # Data. + "confirmed": confirmed, + "deaths": deaths, + "recovered": recovered, + # Latest. + "latest": { + "confirmed": confirmed["latest"], + "deaths": deaths["latest"], + "recovered": recovered["latest"], + }, + } + + +@V1.get("/confirmed") +async def get_confirmed(): + """Confirmed cases.""" + confirmed_data = await get_category("confirmed") + + return confirmed_data + + +@V1.get("/deaths") +async def get_deaths(): + """Total deaths.""" + deaths_data = await get_category("deaths") + + return deaths_data + + +@V1.get("/recovered") +async def get_recovered(): + """Recovered cases.""" + recovered_data = await get_category("recovered") + + return recovered_data diff --git a/app/routers/v2.py b/app/routers/v2.py new file mode 100644 index 00000000..da6a81c2 --- /dev/null +++ b/app/routers/v2.py @@ -0,0 +1,111 @@ +"""app.routers.v2""" +import enum + +from fastapi import APIRouter, HTTPException, Request + +from ..data import DATA_SOURCES +from ..models import LatestResponse, LocationResponse, LocationsResponse + +V2 = APIRouter() + + +class Sources(str, enum.Enum): + """ + A source available for retrieving data. + """ + + JHU = "jhu" + CSBS = "csbs" + NYT = "nyt" + + +@V2.get("/latest", response_model=LatestResponse) +async def get_latest( + request: Request, source: Sources = Sources.JHU +): # pylint: disable=unused-argument + """ + Getting latest amount of total confirmed cases, deaths, and recoveries. + """ + locations = await request.state.source.get_all() + return { + "latest": { + "confirmed": sum(map(lambda location: location.confirmed, locations)), + "deaths": sum(map(lambda location: location.deaths, locations)), + "recovered": sum(map(lambda location: location.recovered, locations)), + } + } + + +# pylint: disable=unused-argument,too-many-arguments,redefined-builtin +@V2.get("/locations", response_model=LocationsResponse, response_model_exclude_unset=True) +async def get_locations( + request: Request, + source: Sources = "jhu", + country_code: str = None, + province: str = None, + county: str = None, + timelines: bool = False, +): + """ + Getting the locations. + """ + # All query paramameters. + params = dict(request.query_params) + + # Remove reserved params. + params.pop("source", None) + params.pop("timelines", None) + + # Retrieve all the locations. + locations = await request.state.source.get_all() + + # Attempt to filter out locations with properties matching the provided query params. + for key, value in params.items(): + # Clean keys for security purposes. + key = key.lower() + value = value.lower().strip("__") + + # Do filtering. + try: + locations = [ + location + for location in locations + if str(getattr(location, key)).lower() == str(value) + ] + except AttributeError: + pass + if not locations: + raise HTTPException( + 404, detail=f"Source `{source}` does not have the desired location data.", + ) + + # Return final serialized data. + return { + "latest": { + "confirmed": sum(map(lambda location: location.confirmed, locations)), + "deaths": sum(map(lambda location: location.deaths, locations)), + "recovered": sum(map(lambda location: location.recovered, locations)), + }, + "locations": [location.serialize(timelines) for location in locations], + } + + +# pylint: disable=invalid-name +@V2.get("/locations/{id}", response_model=LocationResponse) +async def get_location_by_id( + request: Request, id: int, source: Sources = Sources.JHU, timelines: bool = True +): + """ + Getting specific location by id. + """ + location = await request.state.source.get(id) + + return {"location": location.serialize(timelines)} + + +@V2.get("/sources") +async def sources(): + """ + Retrieves a list of data-sources that are availble to use. + """ + return {"sources": list(DATA_SOURCES.keys())} diff --git a/app/routes/__init__.py b/app/routes/__init__.py deleted file mode 100644 index e57a75ea..00000000 --- a/app/routes/__init__.py +++ /dev/null @@ -1,16 +0,0 @@ -from flask import Blueprint, redirect, current_app as app - -# Follow the import order to avoid circular dependency -api_v1 = Blueprint('api_v1', __name__, url_prefix='') -api_v2 = Blueprint('api_v2', __name__, url_prefix='/v2') - -# API version 2. -from .v2 import locations, latest - -# API version 1. -from .v1 import confirmed, deaths, recovered, all - -# Redirect to project page on index. -@app.route('/') -def index(): - return redirect('https://github.com/ExpDev07/coronavirus-tracker-api', 302) diff --git a/app/routes/v1/__init__.py b/app/routes/v1/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/app/routes/v1/all.py b/app/routes/v1/all.py deleted file mode 100644 index 654ae35d..00000000 --- a/app/routes/v1/all.py +++ /dev/null @@ -1,24 +0,0 @@ -from flask import jsonify -from ...routes import api_v1 as api -from ...services.location.jhu import get_category - -@api.route('/all') -def all(): - # Get all the categories. - confirmed = get_category('confirmed') - deaths = get_category('deaths') - recovered = get_category('recovered') - - return jsonify({ - # Data. - 'confirmed': confirmed, - 'deaths': deaths, - 'recovered': recovered, - - # Latest. - 'latest': { - 'confirmed': confirmed['latest'], - 'deaths': deaths['latest'], - 'recovered': recovered['latest'], - } - }) diff --git a/app/routes/v1/confirmed.py b/app/routes/v1/confirmed.py deleted file mode 100644 index 914ebdc9..00000000 --- a/app/routes/v1/confirmed.py +++ /dev/null @@ -1,7 +0,0 @@ -from flask import jsonify -from ...routes import api_v1 as api -from ...services.location.jhu import get_category - -@api.route('/confirmed') -def confirmed(): - return jsonify(get_category('confirmed')) diff --git a/app/routes/v1/deaths.py b/app/routes/v1/deaths.py deleted file mode 100644 index 9005bdca..00000000 --- a/app/routes/v1/deaths.py +++ /dev/null @@ -1,7 +0,0 @@ -from flask import jsonify -from ...routes import api_v1 as api -from ...services.location.jhu import get_category - -@api.route('/deaths') -def deaths(): - return jsonify(get_category('deaths')) diff --git a/app/routes/v1/recovered.py b/app/routes/v1/recovered.py deleted file mode 100644 index d5a58731..00000000 --- a/app/routes/v1/recovered.py +++ /dev/null @@ -1,7 +0,0 @@ -from flask import jsonify -from ...routes import api_v1 as api -from ...services.location.jhu import get_category - -@api.route('/recovered') -def recovered(): - return jsonify(get_category('recovered')) diff --git a/app/routes/v2/__init__.py b/app/routes/v2/__init__.py deleted file mode 100644 index 8b137891..00000000 --- a/app/routes/v2/__init__.py +++ /dev/null @@ -1 +0,0 @@ - diff --git a/app/routes/v2/latest.py b/app/routes/v2/latest.py deleted file mode 100644 index f30ebc63..00000000 --- a/app/routes/v2/latest.py +++ /dev/null @@ -1,19 +0,0 @@ -from flask import jsonify -from ...routes import api_v2 as api -from ...services import jhu - -@api.route('/latest') -def latest(): - # Get the serialized version of all the locations. - locations = [ location.serialize() for location in jhu.get_all() ] - - # All the latest information. - latest = list(map(lambda location: location['latest'], locations)) - - return jsonify({ - 'latest': { - 'confirmed': sum(map(lambda latest: latest['confirmed'], latest)), - 'deaths' : sum(map(lambda latest: latest['deaths'], latest)), - 'recovered': sum(map(lambda latest: latest['recovered'], latest)), - } - }) diff --git a/app/routes/v2/locations.py b/app/routes/v2/locations.py deleted file mode 100644 index 4d9937b6..00000000 --- a/app/routes/v2/locations.py +++ /dev/null @@ -1,34 +0,0 @@ -from flask import jsonify, request -from distutils.util import strtobool -from ...routes import api_v2 as api -from ...services import jhu - -@api.route('/locations') -def locations(): - # Query parameters. - timelines = strtobool(request.args.get('timelines', default='0')) - country_code = request.args.get('country_code', type=str) - - # Retrieve all the locations. - locations = jhu.get_all() - - # Filtering my country code if provided. - if not country_code is None: - locations = list(filter(lambda location: location.country_code == country_code.upper(), locations)) - - # Serialize each location and return. - return jsonify({ - 'locations': [ - location.serialize(timelines) for location in locations - ] - }) - -@api.route('/locations/') -def location(id): - # Query parameters. - timelines = strtobool(request.args.get('timelines', default='1')) - - # Return serialized location. - return jsonify({ - 'location': jhu.get(id).serialize(timelines) - }) diff --git a/app/services/__init__.py b/app/services/__init__.py index 0c5b206c..e69de29b 100644 --- a/app/services/__init__.py +++ b/app/services/__init__.py @@ -1,4 +0,0 @@ -from .location.jhu import JhuLocationService - -# Instances of the services. -jhu = JhuLocationService() \ No newline at end of file diff --git a/app/services/location/__init__.py b/app/services/location/__init__.py index 3338b3d3..6d292b54 100644 --- a/app/services/location/__init__.py +++ b/app/services/location/__init__.py @@ -1,12 +1,14 @@ +"""app.services.location""" from abc import ABC, abstractmethod + class LocationService(ABC): """ Service for retrieving locations. """ @abstractmethod - def get_all(self): + async def get_all(self): """ Gets and returns all of the locations. @@ -16,11 +18,11 @@ def get_all(self): raise NotImplementedError @abstractmethod - def get(self, id): + async def get(self, id): # pylint: disable=redefined-builtin,invalid-name """ Gets and returns location with the provided id. :returns: The location. :rtype: Location """ - raise NotImplementedError \ No newline at end of file + raise NotImplementedError diff --git a/app/services/location/csbs.py b/app/services/location/csbs.py new file mode 100644 index 00000000..d4758e1b --- /dev/null +++ b/app/services/location/csbs.py @@ -0,0 +1,99 @@ +"""app.services.location.csbs.py""" +import csv +import logging +from datetime import datetime + +from asyncache import cached +from cachetools import TTLCache + +from ...caches import check_cache, load_cache +from ...coordinates import Coordinates +from ...location.csbs import CSBSLocation +from ...utils import httputils +from . import LocationService + +LOGGER = logging.getLogger("services.location.csbs") + +class CSBSLocationService(LocationService): + """ + Service for retrieving locations from csbs + """ + + async def get_all(self): + # Get the locations. + locations = await get_locations() + + return locations + + async def get(self, loc_id): # pylint: disable=arguments-differ + # Get location at the index equal to the provided id. + locations = await self.get_all() + + return locations[loc_id] + +# Base URL for fetching data +BASE_URL = "https://facts.csbs.org/covid-19/covid19_county.csv" + +@cached(cache=TTLCache(maxsize=1, ttl=1800)) +async def get_locations(): + """ + Retrieves county locations; locations are cached for 1 hour + + :returns: The locations. + :rtype: dict + """ + + data_id = "csbs.locations" + LOGGER.info(f"{data_id} Requesting data...") + + # check shared cache + cache_results = await check_cache(data_id) + if cache_results: + LOGGER.info(f"{data_id} using shared cache results") + locations = cache_results + else: + LOGGER.info(f"{data_id} shared cache empty") + async with httputils.CLIENT_SESSION.get(BASE_URL) as response: + text = await response.text() + + LOGGER.debug(f"{data_id} Data received") + + data = list(csv.DictReader(text.splitlines())) + LOGGER.debug(f"{data_id} CSV parsed") + + locations = [] + + for i, item in enumerate(data): + # General info. + state = item["State Name"] + county = item["County Name"] + + # Ensure country is specified. + if county in {"Unassigned", "Unknown"}: + continue + + # Date string without "EDT" at end. + last_update = " ".join(item["Last Update"].split(" ")[0:2]) + + # Append to locations. + locations.append( + CSBSLocation( + id=i, + state=state, + county=county, + coordinates=Coordinates(item["Latitude"], item["Longitude"]), + last_updated=datetime.strptime(last_update, "%Y-%m-%d %H:%M").isoformat() + "Z", + confirmed=int(item["Confirmed"] or 0), + deaths=int(item["Death"] or 0), + ) + ) + + LOGGER.info(f"{data_id} Data normalized") + # save the results to distributed cache + # TODO: fix json serialization + try: + await load_cache(data_id, locations) + except TypeError as type_err: + LOGGER.error(type_err) + + return locations diff --git a/app/services/location/jhu.py b/app/services/location/jhu.py index 621c56ca..29b22db6 100644 --- a/app/services/location/jhu.py +++ b/app/services/location/jhu.py @@ -1,137 +1,222 @@ -from . import LocationService -from ...location import Location +"""app.services.location.jhu.py""" +import csv +import logging +import os +from datetime import datetime +from pprint import pformat as pf + +from asyncache import cached +from cachetools import TTLCache + +from ...caches import check_cache, load_cache from ...coordinates import Coordinates -from ...timeline import Timeline +from ...location import TimelinedLocation +from ...models import Timeline +from ...utils import countries +from ...utils import date as date_util +from ...utils import httputils +from . import LocationService + +LOGGER = logging.getLogger("services.location.jhu") +PID = os.getpid() class JhuLocationService(LocationService): """ Service for retrieving locations from Johns Hopkins CSSE (https://github.com/CSSEGISandData/COVID-19). """ - def get_all(self): + async def get_all(self): # Get the locations. - return get_locations() - - def get(self, id): + locations = await get_locations() + return locations + + async def get(self, loc_id): # pylint: disable=arguments-differ # Get location at the index equal to provided id. - return self.get_all()[id] + locations = await self.get_all() + + return locations[loc_id] -import requests -import csv -from datetime import datetime -from cachetools import cached, TTLCache -from ...utils import countrycodes, date as date_util -""" -Base URL for fetching category. -""" -base_url = 'https://raw.githubusercontent.com/CSSEGISandData/2019-nCoV/master/csse_covid_19_data/csse_covid_19_time_series/time_series_19-covid-%s.csv'; +# --------------------------------------------------------------- -@cached(cache=TTLCache(maxsize=1024, ttl=3600)) -def get_category(category): + +# Base URL for fetching category. +BASE_URL = "https://raw.githubusercontent.com/CSSEGISandData/2019-nCoV/master/csse_covid_19_data/csse_covid_19_time_series/" + + +@cached(cache=TTLCache(maxsize=4, ttl=1800)) +async def get_category(category): """ - Retrieves the data for the provided category. The data is cached for 1 hour. + Retrieves the data for the provided category. The data is cached for 30 minutes locally, 1 hour via shared Redis. :returns: The data for category. :rtype: dict """ # Adhere to category naming standard. - category = category.lower().capitalize(); - - # Request the data - request = requests.get(base_url % category) - text = request.text - - # Parse the CSV. - data = list(csv.DictReader(text.splitlines())) - - # The normalized locations. - locations = [] - - for item in data: - # Filter out all the dates. - dates = dict(filter(lambda element: date_util.is_date(element[0]), item.items())) - - # Make location history from dates. - history = { date: int(amount or 0) for date, amount in dates.items() }; - - # Country for this location. - country = item['Country/Region'] - - # Latest data insert value. - latest = list(history.values())[-1]; - - # Normalize the item and append to locations. - locations.append({ - # General info. - 'country': country, - 'country_code': countrycodes.country_code(country), - 'province': item['Province/State'], - - # Coordinates. - 'coordinates': { - 'lat': item['Lat'], - 'long': item['Long'], - }, - - # History. - 'history': history, - - # Latest statistic. - 'latest': int(latest or 0), - }) + category = category.lower() + data_id = f"jhu.{category}" + + # check shared cache + cache_results = await check_cache(data_id) + if cache_results: + LOGGER.info(f"{data_id} using shared cache results") + results = cache_results + else: + LOGGER.info(f"{data_id} shared cache empty") + # URL to request data from. + url = BASE_URL + "time_series_covid19_%s_global.csv" % category + + # Request the data + LOGGER.info(f"{data_id} Requesting data...") + async with httputils.CLIENT_SESSION.get(url) as response: + text = await response.text() + + LOGGER.debug(f"{data_id} Data received") + + # Parse the CSV. + data = list(csv.DictReader(text.splitlines())) + LOGGER.debug(f"{data_id} CSV parsed") + + # The normalized locations. + locations = [] + + for item in data: + # Filter out all the dates. + dates = dict(filter(lambda element: date_util.is_date(element[0]), item.items())) + + # Make location history from dates. + history = {date: int(float(amount or 0)) for date, amount in dates.items()} + + # Latest data insert value. + latest = list(history.values())[-1] + + # Country for this location. + country = item["Country/Region"] + + # Normalize the item and append to locations. + locations.append({ + "country": country, + "country_code": countries.country_code(country), + "province": item["Province/State"], + "coordinates": { + "lat": item["Lat"], + "long": item["Long"], + }, + "history": history, + "latest": int(latest or 0), + }) + LOGGER.debug(f"{data_id} Data normalized") + + # Latest total. + latest = sum(map(lambda location: location["latest"], locations)) + + # Return the final data. + results = { + "locations": locations, + "latest": latest, + "last_updated": datetime.utcnow().isoformat() + "Z", + "source": "https://github.com/ExpDev07/coronavirus-tracker-api", + } + # save the results to distributed cache + await load_cache(data_id, results) - # Latest total. - latest = sum(map(lambda location: location['latest'], locations)) + LOGGER.info(f"{data_id} results:\n{pf(results, depth=1)}") + return results - # Return the final data. - return { - 'locations': locations, - 'latest': latest, - 'last_updated': datetime.utcnow().isoformat() + 'Z', - 'source': 'https://github.com/ExpDev07/coronavirus-tracker-api', - } -@cached(cache=TTLCache(maxsize=1024, ttl=3600)) -def get_locations(): +@cached(cache=TTLCache(maxsize=1, ttl=1800)) +async def get_locations(): """ Retrieves the locations from the categories. The locations are cached for 1 hour. :returns: The locations. :rtype: List[Location] """ + + data_id = "jhu.locations" + LOGGER.info(f"pid:{PID}: {data_id} Requesting data...") + # Get all of the data categories locations. - confirmed = get_category('confirmed')['locations'] - deaths = get_category('deaths')['locations'] - recovered = get_category('recovered')['locations'] + confirmed = await get_category("confirmed") + deaths = await get_category("deaths") + recovered = await get_category("recovered") + + locations_confirmed = confirmed["locations"] + locations_deaths = deaths["locations"] + locations_recovered = recovered["locations"] # Final locations to return. locations = [] - + # *************************************************************************** + # TODO: This iteration approach assumes the indexes remain the same + # and opens us to a CRITICAL ERROR. The removal of a column in the data source + # would break the API or SHIFT all the data confirmed, deaths, recovery producting + # incorrect data to consumers. + # *************************************************************************** # Go through locations. - for index, location in enumerate(confirmed): + for index, location in enumerate(locations_confirmed): # Get the timelines. + + # TEMP: Fix for merging recovery data. See TODO above for more details. + key = (location["country"], location["province"]) + timelines = { - 'confirmed' : confirmed[index]['history'], - 'deaths' : deaths[index]['history'], - 'recovered' : recovered[index]['history'], + "confirmed": location["history"], + "deaths": parse_history(key, locations_deaths), + "recovered": parse_history(key, locations_recovered), } # Grab coordinates. - coordinates = location['coordinates'] - - # Create location and append. - locations.append(Location( - # General info. - index, location['country'], location['province'], Coordinates(coordinates['lat'], coordinates['long']), - - # Timelines (parse dates as ISO). - Timeline({ datetime.strptime(date, '%m/%d/%y').isoformat() + 'Z': amount for date, amount in timelines['confirmed'].items() }), - Timeline({ datetime.strptime(date, '%m/%d/%y').isoformat() + 'Z': amount for date, amount in timelines['deaths'].items() }), - Timeline({ datetime.strptime(date, '%m/%d/%y').isoformat() + 'Z': amount for date, amount in timelines['recovered'].items() }) - )) - - # Finally, return the locations. + coordinates = location["coordinates"] + + # Create location (supporting timelines) and append. + locations.append( + TimelinedLocation( + id=index, + country=location["country"], + province=location["province"], + coordinates=Coordinates(latitude=coordinates["lat"], longitude=coordinates["long"]), + last_updated=datetime.utcnow().isoformat() + "Z", + timelines={ + "confirmed": Timeline( + timeline={ + datetime.strptime(date, "%m/%d/%y").isoformat() + "Z": amount + for date, amount in timelines["confirmed"].items() + } + ), + "deaths": Timeline( + timeline={ + datetime.strptime(date, "%m/%d/%y").isoformat() + "Z": amount + for date, amount in timelines["deaths"].items() + } + ), + "recovered": Timeline( + timeline={ + datetime.strptime(date, "%m/%d/%y").isoformat() + "Z": amount + for date, amount in timelines["recovered"].items() + } + ), + }, + ) + ) + + LOGGER.info(f"{data_id} Data normalized") + return locations - \ No newline at end of file + + +def parse_history(key: tuple, locations: list): + """ + Helper for validating and extracting history content from + locations data based on key. Validates with the current country/province + key to make sure no index/column issue. + """ + + for i, location in enumerate(locations): + if (location["country"], location["province"]) == key: + return location["history"] + + LOGGER.debug(f"iteration data merge error: {key}") + + return {} diff --git a/app/services/location/nyt.py b/app/services/location/nyt.py new file mode 100644 index 00000000..455315f6 --- /dev/null +++ b/app/services/location/nyt.py @@ -0,0 +1,144 @@ +"""app.services.location.nyt.py""" +import csv +import logging +from datetime import datetime + +from asyncache import cached +from cachetools import TTLCache + +from ...caches import check_cache, load_cache +from ...coordinates import Coordinates +from ...location.nyt import NYTLocation +from ...models import Timeline +from ...utils import httputils +from . import LocationService + +LOGGER = logging.getLogger("services.location.nyt") + +class NYTLocationService(LocationService): + """ + Service for retrieving locations from New York Times (https://github.com/nytimes/covid-19-data). + """ + + async def get_all(self): + # Get the locations. + locations = await get_locations() + + return locations + + async def get(self, loc_id): # pylint: disable=arguments-differ + # Get location at the index equal to provided id. + locations = await self.get_all() + + return locations[loc_id] + + +# --------------------------------------------------------------- + +# Base URL for fetching category. +BASE_URL = "https://raw.githubusercontent.com/nytimes/covid-19-data/master/us-counties.csv" + +def get_grouped_locations_dict(data): + """ + Helper function to group history for locations into one dict. + + :returns: The complete data for each unique US county + :rdata: dict + """ + grouped_locations = {} + + # in increasing order of dates + for row in data: + county_state = (row["county"], row["state"]) + date = row["date"] + confirmed = row["cases"] + deaths = row["deaths"] + + # initialize if not existing + if county_state not in grouped_locations: + grouped_locations[county_state] = {"confirmed": [], "deaths": []} + + # append confirmed tuple to county_state (date, # confirmed) + grouped_locations[county_state]["confirmed"].append((date, confirmed)) + # append deaths tuple to county_state (date, # deaths) + grouped_locations[county_state]["deaths"].append((date, deaths)) + + return grouped_locations + + +@cached(cache=TTLCache(maxsize=1, ttl=1800)) +async def get_locations(): + """ + Returns a list containing parsed NYT data by US county. The data is cached for 1 hour. + + :returns: The complete data for US Counties. + :rtype: dict + """ + data_id = "nyt.locations" + # Request the data. + LOGGER.info(f"{data_id} Requesting data...") + # check shared cache + cache_results = await check_cache(data_id) + if cache_results: + LOGGER.info(f"{data_id} using shared cache results") + locations = cache_results + else: + LOGGER.info(f"{data_id} shared cache empty") + async with httputils.CLIENT_SESSION.get(BASE_URL) as response: + text = await response.text() + + LOGGER.debug(f"{data_id} Data received") + + # Parse the CSV. + data = list(csv.DictReader(text.splitlines())) + LOGGER.debug(f"{data_id} CSV parsed") + + # Group together locations (NYT data ordered by dates not location). + grouped_locations = get_grouped_locations_dict(data) + + # The normalized locations. + locations = [] + + for idx, (county_state, histories) in enumerate(grouped_locations.items()): + # Make location history for confirmed and deaths from dates. + # List is tuples of (date, amount) in order of increasing dates. + confirmed_list = histories["confirmed"] + confirmed_history = {date: int(amount or 0) for date, amount in confirmed_list} + + deaths_list = histories["deaths"] + deaths_history = {date: int(amount or 0) for date, amount in deaths_list} + + # Normalize the item and append to locations. + locations.append( + NYTLocation( + id=idx, + state=county_state[1], + county=county_state[0], + coordinates=Coordinates(None, None), # NYT does not provide coordinates + last_updated=datetime.utcnow().isoformat() + "Z", # since last request + timelines={ + "confirmed": Timeline( + timeline={ + datetime.strptime(date, "%Y-%m-%d").isoformat() + "Z": amount + for date, amount in confirmed_history.items() + } + ), + "deaths": Timeline( + timeline={ + datetime.strptime(date, "%Y-%m-%d").isoformat() + "Z": amount + for date, amount in deaths_history.items() + } + ), + "recovered": Timeline(), + }, + ) + ) + LOGGER.info(f"{data_id} Data normalized") + # save the results to distributed cache + # TODO: fix json serialization + try: + await load_cache(data_id, locations) + except TypeError as type_err: + LOGGER.error(type_err) + + return locations diff --git a/app/timeline.py b/app/timeline.py deleted file mode 100644 index dc9adacd..00000000 --- a/app/timeline.py +++ /dev/null @@ -1,36 +0,0 @@ -from datetime import datetime -from collections import OrderedDict - -class Timeline: - """ - Timeline with history of data. - """ - - def __init__(self, history = {}): - self.__timeline = history - - @property - def timeline(self): - """ - Gets the history sorted by date (key). - """ - return OrderedDict(sorted(self.__timeline.items())) - - @property - def latest(self): - """ - Gets the latest available history value. - """ - return list(self.timeline.values())[-1] or 0 - - def serialize(self): - """ - Serializes the timeline into a dict. - - :returns: The serialized timeline. - :rtype: dict - """ - return { - 'latest' : self.latest, - 'timeline': self.timeline - } \ No newline at end of file diff --git a/app/utils/countrycodes.py b/app/utils/countries.py similarity index 73% rename from app/utils/countrycodes.py rename to app/utils/countries.py index 666ccce7..9fb4f98a 100644 --- a/app/utils/countrycodes.py +++ b/app/utils/countries.py @@ -1,10 +1,16 @@ +"""app.utils.countries.py""" +import logging + +LOGGER = logging.getLogger(__name__) + # Default country code. -default_code = "XX" +DEFAULT_COUNTRY_CODE = "XX" # Mapping of country names to alpha-2 codes according to # https://en.wikipedia.org/wiki/ISO_3166-1. # As a reference see also https://github.com/TakahikoKawasaki/nv-i18n (in Java) -is_3166_1 = { +# fmt: off +COUNTRY_NAME__COUNTRY_CODE = { "Afghanistan" : "AF", "Åland Islands" : "AX", "Albania" : "AL", @@ -21,7 +27,10 @@ "Australia" : "AU", "Austria" : "AT", "Azerbaijan" : "AZ", + " Azerbaijan" : "AZ", "Bahamas" : "BS", + "The Bahamas" : "BS", + "Bahamas, The" : "BS", "Bahrain" : "BH", "Bangladesh" : "BD", "Barbados" : "BB", @@ -32,13 +41,18 @@ "Bermuda" : "BM", "Bhutan" : "BT", "Bolivia, Plurinational State of" : "BO", + "Bolivia" : "BO", "Bonaire, Sint Eustatius and Saba" : "BQ", + "Caribbean Netherlands" : "BQ", "Bosnia and Herzegovina" : "BA", + # "Bosnia–Herzegovina" : "BA", + "Bosnia" : "BA", "Botswana" : "BW", "Bouvet Island" : "BV", "Brazil" : "BR", "British Indian Ocean Territory" : "IO", "Brunei Darussalam" : "BN", + "Brunei" : "BN", "Bulgaria" : "BG", "Burkina Faso" : "BF", "Burundi" : "BI", @@ -46,29 +60,40 @@ "Cameroon" : "CM", "Canada" : "CA", "Cape Verde" : "CV", + "Cabo Verde" : "CV", "Cayman Islands" : "KY", "Central African Republic" : "CF", "Chad" : "TD", "Chile" : "CL", "China" : "CN", + "Mainland China" : "CN", "Christmas Island" : "CX", "Cocos (Keeling) Islands" : "CC", "Colombia" : "CO", "Comoros" : "KM", "Congo" : "CG", + "Congo (Brazzaville)" : "CG", + "Republic of the Congo" : "CG", "Congo, the Democratic Republic of the" : "CD", + "Congo (Kinshasa)" : "CD", + "DR Congo" : "CD", "Cook Islands" : "CK", "Costa Rica" : "CR", "Côte d'Ivoire" : "CI", + "Cote d'Ivoire" : "CI", + "Ivory Coast" : "CI", "Croatia" : "HR", "Cuba" : "CU", "Curaçao" : "CW", + "Curacao" : "CW", "Cyprus" : "CY", "Czech Republic" : "CZ", + "Czechia" : "CZ", "Denmark" : "DK", "Djibouti" : "DJ", "Dominica" : "DM", "Dominican Republic" : "DO", + "Dominican Rep" : "DO", "Ecuador" : "EC", "Egypt" : "EG", "El Salvador" : "SV", @@ -77,7 +102,9 @@ "Estonia" : "EE", "Ethiopia" : "ET", "Falkland Islands (Malvinas)" : "FK", + "Falkland Islands" : "FK", "Faroe Islands" : "FO", + "Faeroe Islands" : "FO", "Fiji" : "FJ", "Finland" : "FI", "France" : "FR", @@ -86,8 +113,11 @@ "French Southern Territories" : "TF", "Gabon" : "GA", "Gambia" : "GM", + "The Gambia" : "GM", + "Gambia, The" : "GM", "Georgia" : "GE", "Germany" : "DE", + "Deutschland" : "DE", "Ghana" : "GH", "Gibraltar" : "GI", "Greece" : "GR", @@ -103,31 +133,49 @@ "Haiti" : "HT", "Heard Island and McDonald Islands" : "HM", "Holy See (Vatican City State)" : "VA", + "Holy See" : "VA", + "Vatican City" : "VA", "Honduras" : "HN", "Hong Kong" : "HK", + "Hong Kong SAR" : "HK", "Hungary" : "HU", "Iceland" : "IS", "India" : "IN", "Indonesia" : "ID", "Iran, Islamic Republic of" : "IR", + "Iran" : "IR", + "Iran (Islamic Republic of)" : "IR", "Iraq" : "IQ", "Ireland" : "IE", + "Republic of Ireland" : "IE", "Isle of Man" : "IM", "Israel" : "IL", "Italy" : "IT", "Jamaica" : "JM", "Japan" : "JP", "Jersey" : "JE", + # Guernsey and Jersey form Channel Islands. Conjoin Guernsey on Jersey. + # Jersey has higher population. + # https://en.wikipedia.org/wiki/Channel_Islands + "Guernsey and Jersey" : "JE", + "Channel Islands" : "JE", + # "Channel Islands" : "GB", "Jordan" : "JO", "Kazakhstan" : "KZ", "Kenya" : "KE", "Kiribati" : "KI", "Korea, Democratic People's Republic of" : "KP", + "North Korea" : "KP", "Korea, Republic of" : "KR", + "Korea, South" : "KR", + "South Korea" : "KR", + "Republic of Korea" : "KR", "Kosovo, Republic of" : "XK", + "Kosovo" : "XK", "Kuwait" : "KW", "Kyrgyzstan" : "KG", "Lao People's Democratic Republic" : "LA", + "Laos" : "LA", "Latvia" : "LV", "Lebanon" : "LB", "Lesotho" : "LS", @@ -137,7 +185,11 @@ "Lithuania" : "LT", "Luxembourg" : "LU", "Macao" : "MO", + # TODO Macau is probably a typo. Report it to CSSEGISandData/COVID-19 + "Macau" : "MO", + "Macao SAR" : "MO", "North Macedonia" : "MK", + "Macedonia" : "MK", "Madagascar" : "MG", "Malawi" : "MW", "Malaysia" : "MY", @@ -151,7 +203,11 @@ "Mayotte" : "YT", "Mexico" : "MX", "Micronesia, Federated States of" : "FM", + "F.S. Micronesia" : "FM", + "Micronesia" : "FM", "Moldova, Republic of" : "MD", + "Republic of Moldova" : "MD", + "Moldova" : "MD", "Monaco" : "MC", "Mongolia" : "MN", "Montenegro" : "ME", @@ -159,6 +215,7 @@ "Morocco" : "MA", "Mozambique" : "MZ", "Myanmar" : "MM", + "Burma" : "MM", "Namibia" : "NA", "Nauru" : "NR", "Nepal" : "NP", @@ -176,6 +233,11 @@ "Pakistan" : "PK", "Palau" : "PW", "Palestine, State of" : "PS", + "Palestine" : "PS", + "occupied Palestinian territory" : "PS", + "State of Palestine" : "PS", + "The West Bank and Gaza" : "PS", + "West Bank and Gaza" : "PS", "Panama" : "PA", "Papua New Guinea" : "PG", "Paraguay" : "PY", @@ -187,19 +249,30 @@ "Puerto Rico" : "PR", "Qatar" : "QA", "Réunion" : "RE", + "Reunion" : "RE", "Romania" : "RO", "Russian Federation" : "RU", + "Russia" : "RU", "Rwanda" : "RW", "Saint Barthélemy" : "BL", + "Saint Barthelemy" : "BL", "Saint Helena, Ascension and Tristan da Cunha" : "SH", + "Saint Helena" : "SH", "Saint Kitts and Nevis" : "KN", + "Saint Kitts & Nevis" : "KN", "Saint Lucia" : "LC", "Saint Martin (French part)" : "MF", + "Saint Martin" : "MF", + "St. Martin" : "MF", "Saint Pierre and Miquelon" : "PM", + "Saint Pierre & Miquelon" : "PM", "Saint Vincent and the Grenadines" : "VC", + "St. Vincent & Grenadines" : "VC", "Samoa" : "WS", "San Marino" : "SM", "Sao Tome and Principe" : "ST", + "São Tomé and Príncipe" : "ST", + "Sao Tome & Principe" : "ST", "Saudi Arabia" : "SA", "Senegal" : "SN", "Serbia" : "RS", @@ -207,6 +280,7 @@ "Sierra Leone" : "SL", "Singapore" : "SG", "Sint Maarten (Dutch part)" : "SX", + "Sint Maarten" : "SX", "Slovakia" : "SK", "Slovenia" : "SI", "Solomon Islands" : "SB", @@ -220,14 +294,21 @@ "Suriname" : "SR", "Svalbard and Jan Mayen" : "SJ", "Eswatini" : "SZ", # previous name "Swaziland" + "Swaziland" : "SZ", "Sweden" : "SE", "Switzerland" : "CH", "Syrian Arab Republic" : "SY", + "Syria" : "SY", "Taiwan, Province of China" : "TW", + "Taiwan*" : "TW", + "Taipei and environs" : "TW", + "Taiwan" : "TW", "Tajikistan" : "TJ", "Tanzania, United Republic of" : "TZ", + "Tanzania" : "TZ", "Thailand" : "TH", "Timor-Leste" : "TL", + "East Timor" : "TL", "Togo" : "TG", "Tokelau" : "TK", "Tonga" : "TO", @@ -236,21 +317,32 @@ "Turkey" : "TR", "Turkmenistan" : "TM", "Turks and Caicos Islands" : "TC", + "Turks and Caicos" : "TC", "Tuvalu" : "TV", "Uganda" : "UG", "Ukraine" : "UA", "United Arab Emirates" : "AE", + "Emirates" : "AE", "United Kingdom" : "GB", + "UK" : "GB", + # Conjoin North Ireland on United Kingdom + "North Ireland" : "GB", "United States" : "US", + "US" : "US", "United States Minor Outlying Islands" : "UM", "Uruguay" : "UY", "Uzbekistan" : "UZ", "Vanuatu" : "VU", "Venezuela, Bolivarian Republic of" : "VE", + "Venezuela" : "VE", "Viet Nam" : "VN", + "Vietnam" : "VN", "Virgin Islands, British" : "VG", + "British Virgin Islands" : "VG", "Virgin Islands, U.S." : "VI", + "U.S. Virgin Islands" : "VI", "Wallis and Futuna" : "WF", + "Wallis & Futuna" : "WF", "Western Sahara" : "EH", "Yemen" : "YE", "Zambia" : "ZM", @@ -259,117 +351,30 @@ # see also # https://en.wikipedia.org/wiki/List_of_sovereign_states_and_dependent_territories_by_continent_(data_file)#Data_file # https://en.wikipedia.org/wiki/List_of_sovereign_states_and_dependent_territories_by_continent - "United Nations Neutral Zone" : "XD", - "Iraq-Saudi Arabia Neutral Zone" : "XE", - "Spratly Islands" : "XS", + "United Nations Neutral Zone" : "XD", + "Iraq-Saudi Arabia Neutral Zone" : "XE", + "Spratly Islands" : "XS", - # TODO "Disputed Territory" conflicts with `default_code` - # "Disputed Territory" : "XX", -} + # "Diamond Princess" : default_country_code, + # TODO "Disputed Territory" conflicts with `default_country_code` + # "Disputed Territory" : "XX", -# Mapping of alternative names, spelling, typos to the names of countries used -# by the ISO 3166-1 norm -synonyms = { - "Mainland China" : "China", - "Czechia" : "Czech Republic", - "Channel Islands" : "United Kingdom", - "Republic of Korea" : "Korea, Republic of", - "Republic of Moldova" : "Moldova, Republic of", - "Taiwan" : "Taiwan, Province of China", - "US" : "United States", - # TODO Macau is probably a typo. Report it to CSSEGISandData/COVID-19 - "Macau" : "Macao", - "Macao SAR" : "Macao", - "Vietnam" : "Viet Nam", - "UK" : "United Kingdom", - "Russia" : "Russian Federation", - "Iran (Islamic Republic of)" : "Iran, Islamic Republic of", - "Saint Barthelemy" : "Saint Barthélemy", - "Saint Martin" : "Saint Martin (French part)", - "Palestine" : "Palestine, State of", - "Holy See" : "Holy See (Vatican City State)", - "Brunei" : "Brunei Darussalam", - "Hong Kong SAR" : "Hong Kong", - "Taipei and environs" : "Taiwan, Province of China", - "occupied Palestinian territory" : "Palestine, State of", - "South Korea" : "Korea, Republic of", - "Iran" : "Iran, Islamic Republic of", - "Vatican City" : "Holy See (Vatican City State)", - "DR Congo" : "Congo, the Democratic Republic of the", - "Republic of the Congo" : "Congo", - "Tanzania" : "Tanzania, United Republic of", - "Venezuela" : "Venezuela, Bolivarian Republic of", - "North Korea" : "Korea, Democratic People's Republic of", - "Syria" : "Syrian Arab Republic", - "Bolivia" : "Bolivia, Plurinational State of", - "Laos" : "Lao People's Democratic Republic", - "State of Palestine" : "Palestine, State of", - "Moldova" : "Moldova, Republic of", - "Eswatini" : "Swaziland", - "Cabo Verde" : "Cape Verde", - "Sao Tome & Principe" : "Sao Tome and Principe", - "Micronesia" : "Micronesia, Federated States of", - "St. Vincent & Grenadines" : "Saint Vincent and the Grenadines", - "U.S. Virgin Islands" : "Virgin Islands, U.S.", - "Saint Kitts & Nevis" : "Saint Kitts and Nevis", - "Faeroe Islands" : "Faroe Islands", - "Sint Maarten" : "Sint Maarten (Dutch part)", - "Turks and Caicos" : "Turks and Caicos Islands", - "Saint Martin" : "Saint Martin (French part)", - "British Virgin Islands" : "Virgin Islands, British", - "Wallis & Futuna" : "Wallis and Futuna", - "Saint Helena" : "Saint Helena, Ascension and Tristan da Cunha", - "Saint Pierre & Miquelon" : "Saint Pierre and Miquelon", - "Falkland Islands" : "Falkland Islands (Malvinas)", - "Republic of Ireland" : "Ireland", - "Ivory Coast" : "Côte d'Ivoire", - " Azerbaijan" : "Azerbaijan", - # Conjoin North Ireland on United Kingdom - "North Ireland" : "United Kingdom", - "East Timor" : "Timor-Leste", - "São Tomé and Príncipe" : "Sao Tome and Principe", - # Guernsey and Jersey form Channel Islands. Conjoin Guernsey on Jersey. - # Jersey has higher population. - # https://en.wikipedia.org/wiki/Channel_Islands - "Guernsey and Jersey" : "Jersey", - "Channel Islands" : "Jersey", - "Caribbean Netherlands" : "Bonaire, Sint Eustatius and Saba", - "F.S. Micronesia" : "Micronesia, Federated States of", - "Emirates" : "United Arab Emirates", - # "Bosnia–Herzegovina" : "Bosnia and Herzegovina", - "Bosnia" : "Bosnia and Herzegovina", - "Dominican Rep" : "Dominican Republic", - "Macedonia" : "North Macedonia", - "Korea, South" : "Korea, Republic of", - "Cote d'Ivoire" : "Côte d'Ivoire", - "St. Martin" : "Saint Martin (French part)", - "Congo (Kinshasa)" : "Congo, the Democratic Republic of the", - "Taiwan*" : "Taiwan, Province of China", - "Reunion" : "Réunion", - "Curacao" : "Curaçao", - "Congo (Brazzaville)" : "Congo", - "Deutschland" : "Germany", - "The Bahamas" : "Bahamas", - "The Gambia" : "Gambia", - "Kosovo" : "Kosovo, Republic of", - "Swaziland" : "Eswatini", - "Gambia, The" : "Gambia", - "Bahamas, The" : "Bahamas", # "Others" has no mapping, i.e. the default val is used - # "Cruise Ship" has no mapping, i.e. the default val is used + + # ships: + # "Cruise Ship" + # "MS Zaandam" } -def country_code(country): +# fmt: on +def country_code(value): """ Return two letter country code (Alpha-2) according to https://en.wikipedia.org/wiki/ISO_3166-1 Defaults to "XX". """ - if country in is_3166_1: - return is_3166_1[country] - else: - if country in synonyms: - synonym = synonyms[country] - return is_3166_1[synonym] - else: - print ("No country_code found for '" + country + "'. Using '" + default_code + "'") - return default_code + code = COUNTRY_NAME__COUNTRY_CODE.get(value, DEFAULT_COUNTRY_CODE) + if code == DEFAULT_COUNTRY_CODE: + # log at sub DEBUG level + LOGGER.log(5, f"No country code found for '{value}'. Using '{code}'!") + + return code diff --git a/app/utils/date.py b/app/utils/date.py index 42f75b06..5a2cc8e5 100644 --- a/app/utils/date.py +++ b/app/utils/date.py @@ -1,5 +1,7 @@ +"""app.utils.date.py""" from dateutil.parser import parse + def is_date(string, fuzzy=False): """ Return whether the string can be interpreted as a date. @@ -9,8 +11,8 @@ def is_date(string, fuzzy=False): :param fuzzy: bool, ignore unknown tokens in string if True """ - try: + try: parse(string, fuzzy=fuzzy) return True except ValueError: - return False \ No newline at end of file + return False diff --git a/app/utils/httputils.py b/app/utils/httputils.py new file mode 100644 index 00000000..a0793170 --- /dev/null +++ b/app/utils/httputils.py @@ -0,0 +1,30 @@ +"""app.utils.httputils.py""" +import logging + +from aiohttp import ClientSession + +# Singleton aiohttp.ClientSession instance. +CLIENT_SESSION: ClientSession + + +LOGGER = logging.getLogger(__name__) + + +async def setup_client_session(): + """Set up the application-global aiohttp.ClientSession instance. + + aiohttp recommends that only one ClientSession exist for the lifetime of an application. + See: https://docs.aiohttp.org/en/stable/client_quickstart.html#make-a-request + + """ + global CLIENT_SESSION # pylint: disable=global-statement + LOGGER.info("Setting up global aiohttp.ClientSession.") + CLIENT_SESSION = ClientSession() + + +async def teardown_client_session(): + """Close the application-global aiohttp.ClientSession. + """ + global CLIENT_SESSION # pylint: disable=global-statement + LOGGER.info("Closing global aiohttp.ClientSession.") + await CLIENT_SESSION.close() diff --git a/app/utils/populations.py b/app/utils/populations.py new file mode 100644 index 00000000..c02f15a9 --- /dev/null +++ b/app/utils/populations.py @@ -0,0 +1,60 @@ +"""app.utils.populations.py""" +import json +import logging + +import requests + +import app.io + +LOGGER = logging.getLogger(__name__) +GEONAMES_URL = "http://api.geonames.org/countryInfoJSON" +GEONAMES_BACKUP_PATH = "geonames_population_mappings.json" + +# Fetching of the populations. +def fetch_populations(save=False): + """ + Returns a dictionary containing the population of each country fetched from the GeoNames. + https://www.geonames.org/ + + TODO: only skip writing to the filesystem when deployed with gunicorn, or handle concurent access, or use DB. + + :returns: The mapping of populations. + :rtype: dict + """ + LOGGER.info("Fetching populations...") + + # Mapping of populations + mappings = {} + + # Fetch the countries. + try: + countries = requests.get(GEONAMES_URL, params={"username": "dperic"}, timeout=1.25).json()[ + "geonames" + ] + # Go through all the countries and perform the mapping. + for country in countries: + mappings.update({country["countryCode"]: int(country["population"]) or None}) + + if mappings and save: + LOGGER.info(f"Saving population data to {app.io.save(GEONAMES_BACKUP_PATH, mappings)}") + except (json.JSONDecodeError, KeyError, requests.exceptions.Timeout) as err: + LOGGER.warning(f"Error pulling population data. {err.__class__.__name__}: {err}") + mappings = app.io.load(GEONAMES_BACKUP_PATH) + LOGGER.info(f"Using backup data from {GEONAMES_BACKUP_PATH}") + # Finally, return the mappings. + LOGGER.info("Fetched populations") + return mappings + + +# Mapping of alpha-2 codes country codes to population. +POPULATIONS = fetch_populations() + +# Retrieving. +def country_population(country_code, default=None): + """ + Fetches the population of the country with the provided country code. + + :returns: The population. + :rtype: int + """ + return POPULATIONS.get(country_code, default) diff --git a/docker-compose.yml b/docker-compose.yml new file mode 100644 index 00000000..aa870110 --- /dev/null +++ b/docker-compose.yml @@ -0,0 +1,13 @@ +version: "3.7" + +services: + api: + build: . + image: expdev07/coronavirus-tracker-api:2.0 + restart: always + volumes: + - .:/api + ports: + - "80:80" + stdin_open: true + tty: true diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 00000000..df1ad168 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,62 @@ +[tool.black] +line-length = 100 +target-version = ['py36', 'py37', 'py38'] +include = '\.pyi?$' +exclude = ''' +/( + \.eggs + | \.git + | \.hg + | \.mypy_cache + | \.tox + | \.venv + | virtualenv + | _build + | buck-out + | build + | dist +)/ +''' +[tool.isort] +known_third_party = "invoke,pkg_resources" +multi_line_output = 3 +include_trailing_comma = "True" +force_grid_wrap = 0 +use_parentheses = "True" +line_length = 100 + +[tool.pylint.master] +extension-pkg-whitelist = "pydantic" +ignore = "CVS" +suggestion-mode = "yes" +[tool.pylint.messages_control] +disable = ''' +duplicate-code, +line-too-long, +logging-fstring-interpolation, +bad-continuation, +''' +[tool.pylint.logging] +logging-modules = "logging" +[tool.pylint.imports] +allow-wildcard-with-all = "no" +[tool.pylint.format] +indent-after-paren = "4" +max-line-length = "100" # matches black setting +max-module-lines = "800" +no-space-check = ''' +trailing-comma, +dict-separator +''' +single-line-class-stmt = "no" +single-line-if-stmt = "no" +[tool.pylint.miscellaneous] +notes= ''' +FIXME, +XXX +''' +[tool.pylint.similarities] +ignore-comments = "yes" +ignore-docstrings = "yes" +ignore-imports = "no" +min-similarity-lines = "4" diff --git a/requirements-dev.txt b/requirements-dev.txt new file mode 100644 index 00000000..d6c5857f --- /dev/null +++ b/requirements-dev.txt @@ -0,0 +1,54 @@ +# +# These requirements were autogenerated by pipenv +# To regenerate from the project's Pipfile, run: +# +# pipenv lock --requirements --dev-only +# + +-i https://pypi.org/simple +appdirs==1.4.4 +astroid==2.5.0; python_version >= '3.6' +async-asgi-testclient==1.4.5 +async-generator==1.10 +asyncmock==0.4.2 +attrs==20.3.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +bandit==1.7.0 +black==19.10b0 +certifi==2020.12.5 +chardet==3.0.4 +click==7.1.2; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' +coverage==5.4; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' and python_version < '4.0' +coveralls==3.0.0 +docopt==0.6.2 +gitdb==4.0.5; python_version >= '3.4' +gitpython==3.1.13; python_version >= '3.4' +idna==2.10 +importlib-metadata==3.7.0; python_version < '3.8' +iniconfig==1.1.1 +invoke==1.5.0 +isort==5.7.0 +lazy-object-proxy==1.5.2; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' +mccabe==0.6.1 +mock==4.0.3; python_version >= '3.6' +multidict==5.1.0; python_version >= '3.6' +packaging==20.9; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +pathspec==0.8.1 +pbr==5.5.1; python_version >= '2.6' +pluggy==0.13.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +py==1.10.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +pylint==2.7.1 +pyparsing==2.4.7; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3' +pytest-asyncio==0.14.0 +pytest-cov==2.11.1 +pytest==6.2.2 +pyyaml==5.4.1 +regex==2020.11.13 +requests==2.25.1 +responses==0.12.1 +six==1.15.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +smmap==3.0.5; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +stevedore==3.3.0; python_version >= '3.6' +toml==0.10.2; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3' +typed-ast==1.4.2 +urllib3[secure]==1.26.3; python_version >= '3.5' +wrapt==1.12.1 diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 00000000..2c9b1a66 --- /dev/null +++ b/requirements.txt @@ -0,0 +1,51 @@ +# +# These requirements were autogenerated by pipenv +# To regenerate from the project's Pipfile, run: +# +# pipenv lock --requirements +# + +-i https://pypi.org/simple +aiocache[redis]==0.11.1 +aiofiles==0.6.0 +aiohttp==3.7.4 +aioredis==1.3.1 +asgiref==3.3.1; python_version >= '3.5' +async-timeout==3.0.1; python_full_version >= '3.5.3' +asyncache==0.1.1 +attrs==20.3.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +cachetools==4.2.1 +certifi==2020.12.5 +cffi==1.14.5 +chardet==3.0.4 +click==7.1.2; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' +cryptography==3.4.6 +dataclasses==0.6; python_version < '3.7' +fastapi==0.63.0 +gunicorn==20.0.4 +h11==0.12.0; python_version >= '3.6' +hiredis==1.1.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +httptools==0.1.1 +idna-ssl==1.1.0; python_version < '3.7' +idna==2.10 +multidict==5.1.0; python_version >= '3.6' +psutil==5.8.0; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3' +pycparser==2.20; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +pydantic[dotenv]==1.8 +pyopenssl==20.0.1 +python-dateutil==2.8.1 +python-dotenv==0.15.0 +pyyaml==5.4.1 +requests==2.25.1 +scout-apm==2.18.0 +sentry-sdk==0.20.3 +six==1.15.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +starlette==0.13.6; python_version >= '3.6' +typing-extensions==3.7.4.3 +urllib3[secure]==1.26.3; python_version >= '3.5' +uvicorn[standard]==0.13.4 +uvloop==0.15.2 +watchgod==0.7 +websockets==8.1 +wrapt==1.12.1 +yarl==1.6.3; python_version >= '3.6' diff --git a/runtime.txt b/runtime.txt new file mode 100644 index 00000000..5b3694c1 --- /dev/null +++ b/runtime.txt @@ -0,0 +1 @@ +python-3.8.13 diff --git a/static/redoc.standalone.js b/static/redoc.standalone.js new file mode 100644 index 00000000..55dbe5bb --- /dev/null +++ b/static/redoc.standalone.js @@ -0,0 +1,137 @@ +/*! + * ReDoc - OpenAPI/Swagger-generated API Reference Documentation + * ------------------------------------------------------------- + * Version: "2.0.0-rc.35" + * Repo: https://github.com/Redocly/redoc + */ +!function(e,t){"object"==typeof exports&&"object"==typeof 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