files move and minor correction

Author: AntSimi

.gitignore

@@ -1,10 +1,135 @@
-/build
-/dist
-*.pyc
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
 *.so
-*.c
-*.egg-*
-*.eclipse.*
-*.idea*
-*.project*
-*__pycache__*
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+
+# gallery
+doc/python_module/
+.vscode/settings.json
+files.txt

example/new_identification.py

@@ -0,0 +1,2 @@
+sphinx-gallery
+pyeddytrackersample

requirements_doc.txt

@@ -0,0 +1,6 @@
+from os import path
+
+
+def get_path(name):
+    return path.join(path.dirname(__file__), name)
+

share/Anticyclonic_20190223.nc renamed to src/py_eddy_tracker/data/Anticyclonic_20190223.nc

@@ -151,13 +151,13 @@ if __name__ == '__main__':
             data_dir=None,
             files_model=None,
             files=CONFIG['PATHS']['FILES_PATTERN'],
-            date_regexp='.*c_([0-9]*?).nc',
+            date_regexp='.*c_([0-9]*?).[nz].*',
             date_model='%Y%m%d')
     else:
         DATASET_LIST = browse_dataset_in(
             data_dir=dirname(CONFIG['PATHS']['FILES_PATTERN']),
             files_model=basename(CONFIG['PATHS']['FILES_PATTERN']),
-            date_regexp='.*c_([0-9]*?).nc',
+            date_regexp='.*c_([0-9]*?).[nz].*',
             date_model='%Y%m%d')
 
     if BLANK_PERIOD > 0:

share/Cyclonic_20190223.nc renamed to src/py_eddy_tracker/data/Cyclonic_20190223.nc

@@ -41,7 +41,7 @@ if __name__ == '__main__':
     args = id_parser().parse_args()
 
     variables = get_variable_name(args.filename_in)
-    if is_nc(args.filename_out):
+    if not is_nc(args.filename_out):
         h = zarr.open(args.filename_out, 'w')
         for varname in variables:
             get_variable(args.filename_in, varname).to_zarr(h)